Sequence
atgc intronic sequence ATGC exonic sequence...tttatggacaggcttgtactattcactaagcttttactggattactgtctatcattgatcactcctgagatcatttcctttttttctaaatcatttctagTGTTGACGTATAGACATGAGCTTGGAATGAACTACAATTTCATACGCCCAGACTTGATCGTGGGCTCCTGCTTACAG
Basic information
species | Oryza sativa |
transcript | LOC_Os03g01750.5 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os03g01750.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G052546_T01 (Zea mays), 3'ss of exon 4
----tttatggacaggcttgtactatt-cactaagcttttactggattactgtctatcattgatcactcctgagat-catttcctttttttctaaatcatttctagTGTTGACGTATAGACATGAGCTTGGAATGAACTACAATTTCATACGCCCAGACTTGATCGTGGGCTCCTGCTTACAG
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tgtgcttgccatctaatttttgtgattgcgttatgcttttagtaagtt-tggtctattaa----cttatctgatatgtgtttcttttccccccatgttatta-tagCGTTGACATATAGACATGAACTCGGGATGAACTACAATTTCATACGCCCAGACTTGATTGTAGGATCCTGCTTACAG
upper sequence: LOC_Os03g01750.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA20G33190.1 (Glycine max), 3'ss of exon 4
--tttatggacaggcttgtactattcactaagcttttactggattactgtctatcattgatcactcctgagatcatttcctttttttctaaatcatttctagTGTTGACGTATAGACATGAGCTTGGAATGAACTACAATTTCATACGCCCAGACTTGATCGTGGGCTCCTGCTTACAG
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atagtttggattaactaa-aggatcactcaattgctcatcctattcttttgttctttgaataattaatgttgttaac-cctttctaacgaagtaattcacagTTTTGACTTATAGGCATGAATTAGGAATGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAG
upper sequence: LOC_Os03g01750.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA10G34370.1 (Glycine max), 3'ss of exon 4
--tttatggacaggcttgtactattcactaagcttttactggattactgtctatcattgatcactcctgagatcatttcctttttttctaaatcatttctagTGTTGACGTATAGACATGAGCTTGGAATGAACTACAATTTCATACGCCCAGACTTGATCGTGGGCTCCTGCTTACAG
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atagtttggattaactaa-aggatcactcaattgctcatcctatttttttgttctttgaataattaatgttgttaac-cctttctaacgaagtgcttcacagTTTTGACTTATAGGCATGAATTAGGAATGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAG
upper sequence: LOC_Os03g01750.2 (Oryza sativa), 3'ss of exon 4
lower sequence: Vv00s0250g00020.t01 (Vitis vinifera), 3'ss of exon 4
---tttatggacaggcttgtactattcactaagcttttactggattactgtctatcattgatcactcctgagatcatttcctttttttctaaatcatttctagTGTTGACGTATAGACATGAGCTTGGAATGAACTACAATTTCATACGCCCAGACTTGATCGTGGGCTCCTGCTTACAG
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aacttaatgggaatgctctttaaaagtttccttttttgtcttgctttgtgttcatgcatatggttttagctaaccatttcattcttatgt---tctgatacagTATTGACTTATAGGCATGAGCTAGGAATGAATTACAACTTCATTCGTCCAGACTTGATTGTGGGGTCTTGCCTACAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29678199|gb|CB674474.1|CB674474EST: GGAGAAATCCGATACGTACAGCACCAACATGACGCAAGCTATGGGAGCAG TGTTGACGTATAGACATGAGCTTGGAATGAACTACAATTTCATACGCCCAG
genomic: GGAGAAATCCGATACGTACAGCACCAACATGACGCAAGCTATGGGAGCAGgtaaagaccc ... tcatttctagTGTTGACGTATAGACATGAGCTTGGAATGAACTACAATTTCATACGCCCAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtctatcattgatcactcctgagatcatttcctttttttctaaatcatttctagTGTTGACGTATAGACATGAGCTTGGAATGAACTACAATTTCATACGCCCAGACTTGATCGTGGGCTCCTGCTTACAG
ttctaaa putative branch site (score: 2)
tcatttct CT-rich tract
tttttttctaaatcat TA-rich tract