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gtaagcattcccttcacctgcatatgaattgatctacccgagattagaggcagttaactcgtcaaatccccgacaataataattatcatatgatagaatccgctgcagtgcagcctgcatgtttcaccccattgtgtaaaccttgtcctgtaaacattccagGCATCCGGGGCGTCTACTTCTAGCGCCGAGAGTGGCGCAGTGGAGGCGGGCACGGAGAAATCCGATACGTACAGCACCAACATGACGCAAGCTATGGGAG
species | Oryza sativa |
transcript | LOC_Os03g01750.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACGATGGTTCGTGGCGGGAGTCGCCGATCAAACACTGTCAAAACC GCATCCGGGGCGTCTACTTCTAGCGCCGAGAGTGGCGCAGTGGAGGCGGGCEST: gi|29680013|gb|CB676288.1|CB676288
genomic: ACGATGGTTCGTGGCGGGAGTCGCCGATCAAACACTGTCAAAACCgtaagcattc ... aacattccagGCATCCGGGGCGTCTACTTCTAGCGCCGAGAGTGGCGCAGTGGAGGCGGGC
EST: ACGATGGTTCGTGGCGGGAGTCGCCGATCAAACACTGTCAAAACC GCATCCGGGGCGTCTACTTCTAGCGCCGAGAGTGGCGCAGTGGAGGCGGGCEST: gi|29641485|gb|CB646492.1|CB646492
genomic: ACGATGGTTCGTGGCGGGAGTCGCCGATCAAACACTGTCAAAACCgtaagcattc ... aacattccagGCATCCGGGGCGTCTACTTCTAGCGCCGAGAGTGGCGCAGTGGAGGCGGGC
EST: ACGATGGTTCGTGGCGGGAGTCGCCGATCAAACACTGTCAAAACC GCATCCGGGGCGTCTACTTCTAGCGCCCAGAGTGGCGCAGTGGAGGCGGGC
genomic: ACGATGGTTCGTGGCGGGAGTCGCCGATCAAACACTGTCAAAACCgtaagcattc ... aacattccagGCATCCGGGGCGTCTACTTCTAGCGCCGAGAGTGGCGCAGTGGAGGCGGGC
gtgcagcctgcatgtttcaccccattgtgtaaaccttgtcctgtaaacattccagGCATCCGGGGCGTCTACTTCTAGCGCCGAGAGTGGCGCAGTGGAGGCGGGCACGGAGAAATCCGATACGTACAGCACCAACATGACGCAAGCTATGGGAG
taaacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcattcccttcacctgcatatgaattgatctacccgagattagaggcagttaactcgtcaaatccccgacaataataattatcatatgatagaatccgctgcagtgcagcctgcatgtttcaccccattgtgtaaaccttgtcctgtaaacattccagGCATCCGGGGCGTCTACTTCTAGCGCCGAGAGTGGCGCAGTGGAGGCGGGCACGGAGAAATCCGATACGTACAGCACCAACATGACGCAAGCTATGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT