1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatatcgcttaacctatttccccgcctaccttcttccttgttttaatagttttgtgcctagcatacttcatgcatgatgcctaaggacttagatttcctgctttagttttatgtcttctgtgattttactgacaagatattttcctccttttgaagGTGGCTAGGTGTACCAAGATTATAAGTCCTAATACTGATGATGCTAAATATGTGATTAATGTAAAACAAATTGCAAAG
species | Oryza sativa |
transcript | LOC_Os02g54340.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGATCTAGTATCAGATAAGCAGATGATGCAAGAAGAGCAACCGCTGCAA GTGGCTAGGTGTACCAAGATTATAAGTCCTAATACTGATGATGCTAAATATEST: gi|58603359|gb|CK013887.1|CK013887
genomic: GGGATCTAGTATCAGATAAGCAGATGATGCAAGAAGAGCAACCGCTGCAAgtatatcgct ... ccttttgaagGTGGCTAGGTGTACCAAGATTATAAGTCCTAATACTGATGATGCTAAATAT
EST: GGGATCTAGTATCGGATAAGCAGATGATGCAAGAAGAGCAACCGCTGCAA GTGGCTAGGTGTACCAAGATTATAAGTCCTAATACTGATGATGCTAAATATEST: gi|88372910|gb|CI640361.1|CI640361
genomic: GGGATCTAGTATCAGATAAGCAGATGATGCAAGAAGAGCAACCGCTGCAAgtatatcgct ... ccttttgaagGTGGCTAGGTGTACCAAGATTATAAGTCCTAATACTGATGATGCTAAATAT
EST: GGGATCTAGTATCAGATAAGCAGATGATGCAAGAAGAGCAACCGCTGCAA GTGGCTAGGTGTACCAAGATTATAAGTCCTAATACTGATGATGCTEST: gi|29684844|gb|CB681119.1|CB681119
genomic: GGGATCTAGTATCAGATAAGCAGATGATGCAAGAAGAGCAACCGCTGCAAgtatatcgct ... ccttttgaagGTGGCTAGGTGTACCAAGATTATAAGTCCTAATACTGATGATGCT
EST: GGGATCTAGTATCAGATAAGCAGATGATGCAAGAAGAGCAACCGCTGCAA GTGGCTAGGTGTACCAAGATTATAAGTCCTAATACTGATGATGCTAAATATEST: gi|88310318|gb|CI659108.1|CI659108
genomic: GGGATCTAGTATCAGATAAGCAGATGATGCAAGAAGAGCAACCGCTGCAAgtatatcgct ... ccttttgaagGTGGCTAGGTGTACCAAGATTATAAGTCCTAATACTGATGATGCTAAATAT
EST: GGGATCTAGTATCAGATAAGCAGATGATGCAAGAAGAGCAACCGCTGCAA GTGGCTAGGTGTACCAAGATTATAAGTCCTAATACTGATGATGEST: gi|58685776|gb|CK074463.1|CK074463
genomic: GGGATCTAGTATCAGATAAGCAGATGATGCAAGAAGAGCAACCGCTGCAAgtatatcgct ... ccttttgaagGTGGCTAGGTGTACCAAGATTATAAGTCCTAATACTGATGATG
EST: GGGATCTAGTATCGGATAAGCAGATGATGCAAGAAGAGCAACCGCTGCAA GTGGCTAGGTGTACCAAGATTATAAGTCCTAATACTGATGATGCTAAATATEST: gi|58602175|gb|CK012703.1|CK012703
genomic: GGGATCTAGTATCAGATAAGCAGATGATGCAAGAAGAGCAACCGCTGCAAgtatatcgct ... ccttttgaagGTGGCTAGGTGTACCAAGATTATAAGTCCTAATACTGATGATGCTAAATAT
EST: GGGATCTAGTATCGGATAAGCAGATGATGCAAGAAGAGCAACCGCTGCAA GTGGCTAGGTGTACCAAGATTATAAGTCCTAATACTGATGATGCTAAATATEST: gi|88326660|gb|CI658382.1|CI658382
genomic: GGGATCTAGTATCAGATAAGCAGATGATGCAAGAAGAGCAACCGCTGCAAgtatatcgct ... ccttttgaagGTGGCTAGGTGTACCAAGATTATAAGTCCTAATACTGATGATGCTAAATAT
EST: GGGATCTAGTATCAGATAACCAGATGATGCAAGAAGAGCAACCGCTGCAA GTGGCTAGGTGTACCAAGATTATAAGTEST: gi|58675342|gb|CK064029.1|CK064029
genomic: GGGATCTAGTATCAGATAAGCAGATGATGCAAGAAGAGCAACCGCTGCAAgtatatcgct ... ccttttgaagGTGGCTAGGTGTACCAAGATTATAAGT
EST: GGGATCTAGTATCGGATAAGCAGATGATGCAAGAAGAGCAACCGCTGCAA GTGGCTAGGTGTACCAAGATTATAAGTCCTAATACTGATGATGCTAAATATEST: gi|88574346|gb|CI666115.1|CI666115
genomic: GGGATCTAGTATCAGATAAGCAGATGATGCAAGAAGAGCAACCGCTGCAAgtatatcgct ... ccttttgaagGTGGCTAGGTGTACCAAGATTATAAGTCCTAATACTGATGATGCTAAATAT
EST: GGGATCTAGTATCAGATAAGCAGATGATGCAAGAAGAGCAACCGCTGCAA GTGGCTAGGTGTACCAAGATTATAAGTCCTAATACTGATGATGCTAAATAT
genomic: GGGATCTAGTATCAGATAAGCAGATGATGCAAGAAGAGCAACCGCTGCAAgtatatcgct ... ccttttgaagGTGGCTAGGTGTACCAAGATTATAAGTCCTAATACTGATGATGCTAAATAT
tttagttttatgtcttctgtgattttactgacaagatattttcctccttttgaagGTGGCTAGGTGTACCAAGATTATAAGTCCTAATACTGATGATGCTAAATATGTGATTAATGTAAAACAAATTGCAAAG
tactgac putative branch site (score: 44)
tattttcctcctttt putative PPT
aagatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatcgcttaacctatttccccgcctaccttcttccttgttttaatagttttgtgcctagcatacttcatgcatgatgcctaaggacttagatttcctgctttagttttatgtcttctgtgattttactgacaagatattttcctccttttgaagGTGGCTAGGTGTACCAAGATTATAAGTCCTAATACTGATGATGCTAAATATGTGATTAATGTAAAACAAATTGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG