1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aattgccaaataaatatgttcattttcttcgtggaacataatatcgctgttttggaagtcaataaagtgtgttcggtcattcattttcctccttttgcagCTACACTACATATGGGACAGAATACATCTATCCACAG
species | Oryza sativa |
transcript | LOC_Os02g48340.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGGACACTTCCTCTTGGGTATTACCAAGGATTCCCGGTTCCGCAATACAC CTACACTACATATGGGACAGAATACATCTATCCACAGEST: gi|38474304|gb|CF958436.1|CF958436
genomic: CGGACACTTCCTCTTGGGTATTACCAAGGATTCCCGGTTCCGCAATACAGgtatgatgtg ... ccttttgcagCTACACTACATATGGGACAGAATACATCTATCCACAG
EST: CGGACACTTCCTCTTGGGTATTACCAAGGATTCCCGGTTCCTCAATACAG CTACACTACATATGGGACAGAATACATCTATCCACAGEST: gi|33793822|gb|CF322799.1|CF322799
genomic: CGGACACTTCCTCTTGGGTATTACCAAGGATTCCCGGTTCCGCAATACAGgtatgatgtg ... ccttttgcagCTACACTACATATGGGACAGAATACATCTATCCACAG
EST: TTCCCGGTTCCGCAATACAG CTACACTACATATGGGACAGAATACATCTATCCACAGEST: gi|29677295|gb|CB673570.1|CB673570
genomic: TTCCCGGTTCCGCAATACAGgtatgatgtg ... ccttttgcagCTACACTACATATGGGACAGAATACATCTATCCACAG
EST: CGGACACTTCCTCTTGGGTATTACCAAGGATTCCCGGTTCCGCAATACAG CTACACTACACTATGGGACAGAATACATCTATCCACAG
genomic: CGGACACTTCCTCTTGGGTATTACCAAGGATTCCCGGTTCCGCAATACAGgtatgatgtg ... ccttttgcagCTACACTACA-TATGGGACAGAATACATCTATCCACAG
gctgttttggaagtcaataaagtgtgttcggtcattcattttcctccttttgcagCTACACTACATATGGGACAGAATACATCTATCCACAG
tcattcattttcctcc CT-rich tract
attcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattgccaaataaatatgttcattttcttcgtggaacataatatcgctgttttggaagtcaataaagtgtgttcggtcattcattttcctccttttgcagCTACACTACATATGGGACAGAATACATCTATCCACAG
- - - -aaataaa
- - - - - - - - - - - - - cttcgtg
- - - - - - - - - - - - - - - - -gaacata
- - - - - - - - - - - - - - - - - - - - - - cgctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caataaa