1 5' 3' | 2 5' 3' | 3 5' 3' |
...catgtttgttacatttggagacacagttacacttacatatttccttttatgagttgaatcctgagaagcttagttctgatccatttactctgcagtgcagATGTCCCTTCTACTAGGCCTTTAAATCGCGCTGAATTGTCAAATAAATTTAGGGATCACTTTCAATACACCCTTGACATCAGGCCGTCACAAATCCCTCA
species | Oryza sativa |
transcript | LOC_Os02g42300.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGGTTGAGTTTCGCTGTTGGCACAGGAGTTGCATCTGCAAACAAGCCAG TEST: gi|396941579|gb|HO188788.1|HO188788
genomic: TGGGTTGAGTTTCGCTGTTGGCACAGGAGTTGCATCTGCAAACAAGCCAGgtaatttgtt ... tgcagtgcag-
EST: TGGGTTGAGTTTCGCTGTTGGCACAGGAGTTGCATCTGCAAACAAGCCAG TEST: gi|396941579|gb|HO188788.1|HO188788
genomic: TGGGTTGAGTTTCGCTGTTGGCACAGGAGTTGCATCTGCAAACAAGCCAGgtaatttgtt ... tgcagtgcag-
EST: TGGGTTGAGTTTCGCTGTTGGCACAGGAGTTGCATCTGCAAACAAGCCAG TEST: gi|396941579|gb|HO188788.1|HO188788
genomic: TGGGTTGAGTTTCGCTGTTGGCACAGGAGTTGCATCTGCAAACAAGCCAGgtaatttgtt ... tgcagtgcag-
EST: TGGGTTGAGTTTCGCTGTTGGCACAGGAGTTGCATCTGCAAACAAGCCAG T
genomic: TGGGTTGAGTTTCGCTGTTGGCACAGGAGTTGCATCTGCAAACAAGCCAGgtaatttgtt ... tgcagtgcag-
tttatgagttgaatcctgagaagcttagttctgatccatttactctgcagtgcagATGTCCCTTCTACTAGGCCTTTAAATCGCGCTGAATTGTCAAATAAATTTAGGGATCACTTTCAATACACCCTTGACATCAGGCCGTCACAAATCCCTCA
ttctgat putative branch site (score: 3)
tttactct putative PPT
atttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgtttgttacatttggagacacagttacacttacatatttccttttatgagttgaatcctgagaagcttagttctgatccatttactctgcagtgcagATGTCCCTTCTACTAGGCCTTTAAATCGCGCTGAATTGTCAAATAAATTTAGGGATCACTTTCAATACACCCTTGACATCAGGCCGTCACAAATCCCTCA
- tgtttgt
- - - - - acatttg
- - - - - - - - - - - - - - - -cttacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgaatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatcc