1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagacatcctgattagttatcacgtggaggctagtagagttccaagagaactttgcaagaatgtaatattgcactgtatttatttccgtagatgatgttttgatgtttttgttttccttttcagGGTATCACTGTCATGGATGATCCAATATATGGGTCTCTCACTGATATTG
species | Oryza sativa |
transcript | LOC_Os02g34500.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CATCAATGCAATCAGATCTTCATGGTGGTATAGGTGCTAATGATTCTGAG GGTATCACTGTCATGGATGATCCAATATATGGGTCTCTCACTGATATTGEST: gi|89192620|gb|CI049918.1|CI049918
genomic: CATCAATGCAATCAGATCTTCATGGTGGTATAGGTGCTAATGATTCTGAGgtgagacatc ... tccttttcagGGTATCACTGTCATGGATGATCCAATATATGGGTCTCTCACTGATATTG
EST: CATCAATGCAATCAGATCTTCATGGTGGTATAGGTGCTAATGATTCTGAG GGTATCACTGTCATGGATGATCCAATATATGGGTCTCTCACTGATATTGEST: gi|29627948|gb|CB632959.1|CB632959
genomic: CATCAATGCAATCAGATCTTCATGGTGGTATAGGTGCTAATGATTCTGAGgtgagacatc ... tccttttcagGGTATCACTGTCATGGATGATCCAATATATGGGTCTCTCACTGATATTG
EST: CATCAATGCAATCAGATCTTCATGGTGGTATAGGTGCTAATGATTCTGAG GGTATCACTGTCATGGATGATCCAATATATGGGTCTCTCACTGATATTGEST: gi|88437353|gb|CI528712.1|CI528712
genomic: CATCAATGCAATCAGATCTTCATGGTGGTATAGGTGCTAATGATTCTGAGgtgagacatc ... tccttttcagGGTATCACTGTCATGGATGATCCAATATATGGGTCTCTCACTGATATTG
EST: CATCAAAGCAATCAGATCTTCATGGTGGTATAGGTGCTNATGATTCTGAG GGTATCACTGTCAT-GANTGATCCCATATATGGGTCTCTCACTGATATTG
genomic: CATCAATGCAATCAGATCTTCATGGTGGTATAGGTGCTAATGATTCTGAGgtgagacatc ... tccttttcagGGTATCACTGTCATGGA-TGATCCAATATATGGGTCTCTCACTGATATTG
tgcactgtatttatttccgtagatgatgttttgatgtttttgttttccttttcagGGTATCACTGTCATGGATGATCCAATATATGGGTCTCTCACTGATATTG
ttttgat putative branch site (score: 14)
tgtttttgttttcctt CT-rich tract
tgtatttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagacatcctgattagttatcacgtggaggctagtagagttccaagagaactttgcaagaatgtaatattgcactgtatttatttccgtagatgatgttttgatgtttttgttttccttttcagGGTATCACTGTCATGGATGATCCAATATATGGGTCTCTCACTGATATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA