1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttagtttcatcgtcgcaagcacggttggttttgatgtatcagaaccgagtccatttttggtgctaattgaatttggaaactatatgccttttcagGCCCAGAGCGAGATGAGCAAGGGAAGCCAA
species | Oryza sativa |
transcript | LOC_Os01g72790.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTCCACCACCAGAACGTTATCCAGCTCAAGGAGATCGTCACCTCTCCAG GCCCAGAGCGAGATGAGCAAGGGAAGCCAAEST: gi|86894722|gb|CI308363.1|CI308363
genomic: GCTCCACCACCAGAACGTTATCCAGCTCAAGGAGATCGTCACCTCTCCAGgttagtttca ... gccttttcagGCCCAGAGCGAGATGAGCAAGGGAAGCCAA
EST: GCTCCACCACCAGAACGTTATCCAGCTCAAGGAGATCGTCACCTCTCCAG GACCAGAGCGAGATGAGCAAGGGAAGCCAA
genomic: GCTCCACCACCAGAACGTTATCCAGCTCAAGGAGATCGTCACCTCTCCAGgttagtttca ... gccttttcagGCCCAGAGCGAGATGAGCAAGGGAAGCCAA
agaaccgagtccatttttggtgctaattgaatttggaaactatatgccttttcagGCCCAGAGCGAGATGAGCAAGGGAAGCCAA
tgctaat putative branch site (score: 31)
tgccttttc putative PPT
taattgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtttcatcgtcgcaagcacggttggttttgatgtatcagaaccgagtccatttttggtgctaattgaatttggaaactatatgccttttcagGCCCAGAGCGAGATGAGCAAGGGAAGCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG