1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatgttctaatcgatttcttgtctgatgttgatgtgaattatggcgttatttttttgggtgatttatggtttgtttgattgcgaacagCGCTCTTGCCGTCGTGGACGATGACGACGGCGGCGACCACCGAGAGGAGCTGAGAGGCGTGCTGCGGCTGTTCCCGATATGGGCGACGTGCATCATCTAC
species | Oryza sativa |
transcript | LOC_Os01g65100.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTCGCCTCGCCAGAGCGTTCGTCGCGCTCATCAGAGGATCCAAAGACGA CGCTCTTGCCGTCGTGGACGATGACGACGGCGGCGACCACCGAGAGGAGCTEST: gi|58691589|gb|CK080276.1|CK080276
genomic: GCTCGCCTCGCCAGAGCGTTCGTCGCGCTCATCAGAGGATCCAAAGACGAgtatgttcta ... ttgcgaacagCGCTCTTGCCGTCGTGGACGATGACGACGGCGGCGACCACCGAGAGGAGCT
EST: GCTCGCCTCGCCAGAGCGTTCGTCGCGCTCATCAGAGGATCCAAAGACGA CGCTCTTGCCGTCGTGGACGATGACGACGGCGGCGACCACCGAGAGGAGCT
genomic: GCTCGCCTCGCCAGAGCGTTCGTCGCGCTCATCAGAGGATCCAAAGACGAgtatgttcta ... ttgcgaacagCGCTCTTGCCGTCGTGGACGATGACGACGGCGGCGACCACCGAGAGGAGCT
gtgaattatggcgttatttttttgggtgatttatggtttgtttgattgcgaacagCGCTCTTGCCGTCGTGGACGATGACGACGGCGGCGACCACCGAGAGGAGCTGAGAGGCGTGCTGCGGCTGTTCCCGATATGGGCGACGTGCATCATCTAC
gtttgat putative branch site (score: 17)
ttattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttctaatcgatttcttgtctgatgttgatgtgaattatggcgttatttttttgggtgatttatggtttgtttgattgcgaacagCGCTCTTGCCGTCGTGGACGATGACGACGGCGGCGACCACCGAGAGGAGCTGAGAGGCGTGCTGCGGCTGTTCCCGATATGGGCGACGTGCATCATCTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT