1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...attgggttatttcatcaagctgctggaaattctgtttgaagctcatgggattttgatttactatgttgttactaacagttcttttcaccattcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATTGCTTGCATTGGTGAGACCCTTGAACAGAGAGAAGCAGGAACAACGATGG
species | Oryza sativa |
transcript | LOC_Os01g62420.4 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATTEST: gi|33688031|gb|CF316270.1|CF316270
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATTEST: gi|33688122|gb|CF316361.1|CF316361
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATTEST: gi|58597190|gb|CK007718.1|CK007718
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: TGATACTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAGGTGAT TTTGTTGCTGACAAAATTGCGTACACACTTTCCCAAGGTATCAAGGTAATTEST: gi|33689921|gb|CF318160.1|CF318160
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT TTTGTTGCTGACAAAATTGCGTACGCAEST: gi|33693382|gb|CF321621.1|CF321621
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCA
EST: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATTEST: gi|27576424|gb|CA999118.1|CA999118
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT TTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATTEST: gi|58682138|gb|CK070825.1|CK070825
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATT
EST: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT TTTGTTGCTGACAAAATTGCGTACACACTT
genomic: TGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGATgtgagttctt ... ttcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTT
tgggattttgatttactatgttgttactaacagttcttttcaccattcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATTGCTTGCATTGGTGAGACCCTTGAACAGAGAGAAGCAGGAACAACGATGG
tactaac putative branch site (score: 0)
ttcttttcaccattc putative PPT
ttttgatttactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgggttatttcatcaagctgctggaaattctgtttgaagctcatgggattttgatttactatgttgttactaacagttcttttcaccattcatgacagTTTGTTGCTGACAAAATTGCGTACGCACTTTCCCAAGGTATCAAGGTAATTGCTTGCATTGGTGAGACCCTTGAACAGAGAGAAGCAGGAACAACGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - gctgctg
- - - - - - - - - - - - - - - -ctgtttg
- - - - - - - - - - - - - - - - - - - - gctcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actaaca