1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...actgcagtgctattatattaaggggtgaatgacagcagaatgtggaatgctttaagagcaatcctttgccaattcactgacgtatgcttcatatttgcagTGCCGAGATGTTGGTGAACCTGCAGGTGCCTTGGGTGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT
species | Oryza sativa |
transcript | LOC_Os01g62420.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCGCAGAATTGCTGGGTGCGCAAGGGCGGCGC-TTCACTGGCGAGATCAG TGCCGAGATGTTGGTGA-CCTNCAGGTGCCTTGGGTGATTCTGGGACACTCEST: gi|58682138|gb|CK070825.1|CK070825
genomic: GCGCAGAATTGCTGGGTGCGCAAGGGCGGCGCCTTCACTGGCGAGATCAGgtgagcgtcc ... atatttgcagTGCCGAGATGTTGGTGAACCTGCAGGTGCCTTGGGTGATTCTGGGACACTC
EST: GCGCAGAATTGCTGGGTGCGCAAGGGCGGCGCCTTCACTGGCGAGATCAG TGCCGAGATGTNGGTGAACCTGCAGGTGCCTTGGGTGATTCTGGGACACTCEST: gi|25800835|gb|CA756796.1|CA756796
genomic: GCGCAGAATTGCTGGGTGCGCAAGGGCGGCGCCTTCACTGGCGAGATCAGgtgagcgtcc ... atatttgcagTGCCGAGATGTTGGTGAACCTGCAGGTGCCTTGGGTGATTCTGGGACACTC
EST: GCGCAGAATTGCTGGGTGCGCAAGGGCGGCGCCTTCACTGGCGAGATCAG TGCCGAGATGTTGGTGAACCTGCEST: gi|88391559|gb|CI600748.1|CI600748
genomic: GCGCAGAATTGCTGGGTGCGCAAGGGCGGCGCCTTCACTGGCGAGATCAGgtgagcgtcc ... atatttgcagTGCCGAGATGTTGGTGAACCTGC
EST: GAGCACAATTGCTGGGTGCGCAAGGGCGGCGCCTTCACTGGCGACATCAG TGCCGAGATGTTGGTGAACCTGCAGGTGCCTTGGGTGATTCTGGGACACTCEST: gi|88722774|gb|CI746284.1|CI746284
genomic: GCGCAGAATTGCTGGGTGCGCAAGGGCGGCGCCTTCACTGGCGAGATCAGgtgagcgtcc ... atatttgcagTGCCGAGATGTTGGTGAACCTGCAGGTGCCTTGGGTGATTCTGGGACACTC
EST: GCGCAGAATTGCTGGGTGCGCAAGGGCGGCGCCTTCACTGGCGAGATCAG TGCCGAGATGTTGGTGAACCTGCAGGTGCCTTGGGTGATTCTGGGACACEST: gi|33686817|gb|CF315056.1|CF315056
genomic: GCGCAGAATTGCTGGGTGCGCAAGGGCGGCGCCTTCACTGGCGAGATCAGgtgagcgtcc ... atatttgcagTGCCGAGATGTTGGTGAACCTGCAGGTGCCTTGGGTGATTCTGGGACAC
EST: GCGCAGAATTGCTGGGTGCGCAAGGGCGGCGCCTTCACTGGCGAGATCAG TGCCGAGATGTTGGTGAACCTGCAGGTGCCTTGGGTGATTCCGGGACACTC
genomic: GCGCAGAATTGCTGGGTGCGCAAGGGCGGCGCCTTCACTGGCGAGATCAGgtgagcgtcc ... atatttgcagTGCCGAGATGTTGGTGAACCTGCAGGTGCCTTGGGTGATTCTGGGACACTC
aatgctttaagagcaatcctttgccaattcactgacgtatgcttcatatttgcagTGCCGAGATGTTGGTGAACCTGCAGGTGCCTTGGGTGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT
cactgac putative branch site (score: 2)
ttcatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actgcagtgctattatattaaggggtgaatgacagcagaatgtggaatgctttaagagcaatcctttgccaattcactgacgtatgcttcatatttgcagTGCCGAGATGTTGGTGAACCTGCAGGTGCCTTGGGTGATTCTGGGACACTCTGAGCGGAGAGCGCTGATGGGCGAATCAAGTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT