1 5' 3' | 2 5' 3' | 3 5' 3' |
...catcaataatgtttcaagctgttcttctattttaatttctcaggaactaatatcttcttgtactgtgcatggatggaattcatggacggacgacgtacagATCTTGAGCAACTCGATGTACAAGAGCGTGGAGCACCGCGTGATCGTGAACGCCGAGGAGGAGCGCATCTCGCTCGCACTCTTCTACAACCCGAGAGGCG
species | Oryza sativa |
transcript | LOC_Os01g61610.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCAGCCCCTCCCCGACGCCTTCATCGTCAACGTCGGCGACCAGATTGAG ATCTTGAGCAACTCGATGTACAAGAGCGTGGAGCACCGCGTGATCGTGAACEST: gi|58689249|gb|CK077936.1|CK077936
genomic: TGCAGCCCCTCCCCGACGCCTTCATCGTCAACGTCGGCGACCAGATTGAGgtacacatat ... cgacgtacagATCTTGAGCAACTCGATGTACAAGAGCGTGGAGCACCGCGTGATCGTGAAC
EST: TGCAGCCCCTCCCCGACGCCTTCATCGTCAACGTCGGCGACCAGATTGAG ATCTTGAGCAACTCGATGTACAAGAGCGTGGAGCACCGCGTGATCGTGAACEST: gi|88220933|gb|CI218784.1|CI218784
genomic: TGCAGCCCCTCCCCGACGCCTTCATCGTCAACGTCGGCGACCAGATTGAGgtacacatat ... cgacgtacagATCTTGAGCAACTCGATGTACAAGAGCGTGGAGCACCGCGTGATCGTGAAC
EST: CGTCAACGTCGGCGACCAGATTGAG ATCTTGAGCAACTCGATGTACAAGAGCGTGGAGCACCGCGTGATCGTGAACEST: gi|58687312|gb|CK075999.1|CK075999
genomic: CGTCAACGTCGGCGACCAGATTGAGgtacacatat ... cgacgtacagATCTTGAGCAACTCGATGTACAAGAGCGTGGAGCACCGCGTGATCGTGAAC
EST: TGCAGCCCCTCCCCGACGCCTTCATCGTCAACGTCGGCGACCAGATTGAG ATCTTGAGCAACTCGATGTACAAGAGCGTGGAGCACCGCGTGATCGTGAAC
genomic: TGCAGCCCCTCCCCGACGCCTTCATCGTCAACGTCGGCGACCAGATTGAGgtacacatat ... cgacgtacagATCTTGAGCAACTCGATGTACAAGAGCGTGGAGCACCGCGTGATCGTGAAC
actaatatcttcttgtactgtgcatggatggaattcatggacggacgacgtacagATCTTGAGCAACTCGATGTACAAGAGCGTGGAGCACCGCGTGATCGTGAACGCCGAGGAGGAGCGCATCTCGCTCGCACTCTTCTACAACCCGAGAGGCG
aactaat putative branch site (score: 2)
aattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catcaataatgtttcaagctgttcttctattttaatttctcaggaactaatatcttcttgtactgtgcatggatggaattcatggacggacgacgtacagATCTTGAGCAACTCGATGTACAAGAGCGTGGAGCACCGCGTGATCGTGAACGCCGAGGAGGAGCGCATCTCGCTCGCACTCTTCTACAACCCGAGAGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG