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...atctaattgagatgcatttgagagctaagctaacttattgactgataatacacactttatctgtgatacttgacatcttatgcatagaaattccttgcagGATCTATACGAGACATTATTTTTCATTGTGGACTTGCATGCG
species | Oryza sativa |
transcript | LOC_Os01g54020.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TACACCTTGGAAATTATCTTGGTGCTATTAAGAATTGGGTTTCACTTCAG GATCTATACGAGACATTATTTTTCATTGTGGACTTGCATGCGATTACGTEST: gi|88341927|gb|CI644264.1|CI644264
genomic: TACACCTTGGAAATTATCTTGGTGCTATTAAGAATTGGGTTTCACTTCAGgtagtggttt ... ttccttgcagGATCTATACGAGACATTATTTTTCATTGTGGACTTGCATGCGATTACGT
EST: TACACCTTGGAAATTATCTTGGTGCTATTAAGAATTGGGTTTCACTTCAG GATCTATACGAGACATTATTTTTCATTGTGGACTTGCATEST: gi|88335142|gb|CI658149.1|CI658149
genomic: TACACCTTGGAAATTATCTTGGTGCTATTAAGAATTGGGTTTCACTTCAGgtagtggttt ... ttccttgcagGATCTATACGAGACATTATTTTTCATTGTGGACTTGCAT
EST: TACACCTTGGAAATTATCTTGGTGCTATTAAGAATTGGGTTTCACTTCAG GATCTATACGAGACATTATTTTTCATTGTGGACTEST: gi|44667170|gb|CR280604.1|CR280604
genomic: TACACCTTGGAAATTATCTTGGTGCTATTAAGAATTGGGTTTCACTTCAGgtagtggttt ... ttccttgcagGATCTATACGAGACATTATTTTTCATTGTGGACT
EST: TACACCTTGGAAATTATCTTGGTGCTATTAAGAATTGGGTTTCACTTCAG GATCTATACGAGACATTATTTTTCATTGTGGACTTGCATGCG
genomic: TACACCTTGGAAATTATCTTGGTGCTATTAAGAATTGGGTTTCACTTCAGgtagtggttt ... ttccttgcagGATCTATACGAGACATTATTTTTCATTGTGGACTTGCATGCG
taatacacactttatctgtgatacttgacatcttatgcatagaaattccttgcagGATCTATACGAGACATTATTTTTCATTGTGGACTTGCATGCG
acttgac putative branch site (score: 8)
ttccttgc putative PPT
atagaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctaattgagatgcatttgagagctaagctaacttattgactgataatacacactttatctgtgatacttgacatcttatgcatagaaattccttgcagGATCTATACGAGACATTATTTTTCATTGTGGACTTGCATGCG
- - - - - -atgcatt
- - - - - - - - - - - - - - - - - - -ttgactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttatgca