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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaatatataattgttattaattaattgattttctgcaagcttttcatcttgaacgtaacttgtgtgtgttgtgcacttcatgcttttttctctcttccatttgtcaacatttccctggttgcaaattgaacggatcagtagAGATGGAAGCTACAACTTTATAACTAGAACGGCTGCATTCCACTTGATTCTTCAGCATAGCCCTTTACTGTTCTGCACCTCTAGACTTATTGTACATGCA

Basic information

species Oryza sativa
transcript LOC_Os01g43650.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86538031|gb|CI178237.1|CI178237
EST:     GCGCCAAAAATGTGATGGCTAGGGAGTGCTTGATGATCAGCTTGGTCTTG                         AGATGGAAGCTACAACTTTATAACTAGAACGGCTGCATTCCACTTGATTCT
genomic: GCGCCAAAAATGTGATGGCTAGGGAGTGCTTGATGATCAGCTTGGTCTTGgtgagaatat ... ggatcagtagAGATGGAAGCTACAACTTTATAACTAGAACGGCTGCATTCCACTTGATTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctctcttccatttgtcaacatttccctggttgcaaattgaacggatcagtagAGATGGAAGCTACAACTTTATAACTAGAACGGCTGCATTCCACTTGATTCTTCAGCATAGCCCTTTACTGTTCTGCACCTCTAGACTTATTGTACATGCA
                                    aaattgaa  TA-rich tract