1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aaattcagcttcttgtttcctgctataatgcccagctttagtctcgccacgacagcaaatctggtacactgcattcgtacctggtatcacattattatagGAAGTATGGGCTATGGTAATCACTCGTCTTACCAGGAGCTG
species | Oryza sativa |
transcript | LOC_Os01g25810.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
gccacgacagcaaatctggtacactgcattcgtacctggtatcacattattatagGAAGTATGGGCTATGGTAATCACTCGTCTTACCAGGAGCTG
tatcacattattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaattcagcttcttgtttcctgctataatgcccagctttagtctcgccacgacagcaaatctggtacactgcattcgtacctggtatcacattattatagGAAGTATGGGCTATGGTAATCACTCGTCTTACCAGGAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - -cagcttc
- - - - - - - - - cctgcta
- - - - - - - - - - - - - aatgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - cagcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctggtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtacctg