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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtatattccttttctccacttagttttcttgttttggaattttcttaactttgtattgtaaaaccctaactgaaatatggtctccagACGGAGATAGTAGTGAGACAGCTGAAAATAAACCTGGTAACTTCGCCTCGGAAAATGCACCATCCTCTCCATGTGATGCTTCCTTGCACCAAACAGAAGA

Basic information

species Oryza sativa
transcript LOC_Os01g07540.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27548609|gb|CA766815.2|CA766815
EST:     TAATGCAGAGGTCAATGCTGATATTTCACTTGGAGACTCACAAATAAATG                         ACGGAGATAGTAGTGAGACAGCTGAAAATAAACCTGGTAACTTCGCCTCGG
genomic: TAATGCAGAGGTCAATGCTGATATTTCACTTGGAGACTCACAAATAAATGgttggtatat ... tggtctccagACGGAGATAGTAGTGAGACAGCTGAAAATAAACCTGGTAACTTCGCCTCGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggaattttcttaactttgtattgtaaaaccctaactgaaatatggtctccagACGGAGATAGTAGTGAGACAGCTGAAAATAAACCTGGTAACTTCGCCTCGGAAAATGCACCATCCTCTCCATGTGATGCTTCCTTGCACCAAACAGAAGA
                               ccctaac  putative branch site (score: 2)
                                                tctcc  putative PPT
     aattttcttaacttt  TA-rich tract