1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...taaacttattgcatgttgtgagatgcagttatcactccaccttgcacactaaccactgcaccaaggtcatgctaaaatgctgaatgctctttgttttcagATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTCTTCAGGAAGAAGTTTAG
species | Oryza sativa |
transcript | LOC_Os01g07310.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAG ATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTCEST: gi|58689272|gb|CK077959.1|CK077959
genomic: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAGgtaggcattg ... ttgttttcagATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTC
EST: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAG ATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTCEST: gi|33679023|gb|CF307262.1|CF307262
genomic: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAGgtaggcattg ... ttgttttcagATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTC
EST: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAG ATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTCEST: gi|33679263|gb|CF307502.1|CF307502
genomic: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAGgtaggcattg ... ttgttttcagATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTC
EST: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAG ATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTCEST: gi|29646078|gb|CB651085.1|CB651085
genomic: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAGgtaggcattg ... ttgttttcagATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTC
EST: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAG ATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTCEST: gi|218500395|gb|FG958811.1|FG958811
genomic: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAGgtaggcattg ... ttgttttcagATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTC
EST: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAG ATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTCEST: gi|58693672|gb|CK082359.1|CK082359
genomic: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAGgtaggcattg ... ttgttttcagATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTC
EST: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAG ATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTCEST: gi|58691484|gb|CK080171.1|CK080171
genomic: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAGgtaggcattg ... ttgttttcagATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTC
EST: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAG ATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTCEST: gi|29666174|gb|CB662449.1|CB662449
genomic: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAGgtaggcattg ... ttgttttcagATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTC
EST: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAG ATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTCEST: gi|218479998|gb|FG959805.1|FG959805
genomic: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAGgtaggcattg ... ttgttttcagATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTC
EST: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAG ATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTCEST: gi|2796302|gb|AA749596.1|AA749596
genomic: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAGgtaggcattg ... ttgttttcagATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTC
EST: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAG ATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTCEST: gi|58665638|gb|CK054324.1|CK054324
genomic: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAGgtaggcattg ... ttgttttcagATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTC
EST: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAG ATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTCEST: gi|58686479|gb|CK075166.1|CK075166
genomic: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAGgtaggcattg ... ttgttttcagATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTC
EST: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAG ATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTCEST: gi|29663298|gb|CB659573.1|CB659573
genomic: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAGgtaggcattg ... ttgttttcagATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTC
EST: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAG ATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTCEST: gi|29645083|gb|CB650090.1|CB650090
genomic: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAGgtaggcattg ... ttgttttcagATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTC
EST: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAG ATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTCEST: gi|29641313|gb|CB646320.1|CB646320
genomic: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAGgtaggcattg ... ttgttttcagATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTC
EST: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAG ATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTCEST: gi|29645955|gb|CB650962.1|CB650962
genomic: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAGgtaggcattg ... ttgttttcagATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTC
EST: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAG ATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTCEST: gi|58687536|gb|CK076223.1|CK076223
genomic: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAGgtaggcattg ... ttgttttcagATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTC
EST: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAG ATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTCEST: gi|33796589|gb|CF324162.1|CF324162
genomic: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAGgtaggcattg ... ttgttttcagATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTC
EST: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAG ATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTCEST: gi|29681211|gb|CB677486.1|CB677486
genomic: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAGgtaggcattg ... ttgttttcagATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTC
EST: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAG ATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTCEST: gi|86899011|gb|CI296202.1|CI296202
genomic: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAGgtaggcattg ... ttgttttcagATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTC
EST: CAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAG ATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTCEST: gi|58656550|gb|CK045230.1|CK045230
genomic: CAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAGgtaggcattg ... ttgttttcagATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTC
EST: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTAACAG ATGACAAAGCTGGCAATTATCC
genomic: TTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAGgtaggcattg ... ttgttttcagATGACAAAGCTGGCAATTATCC
acactaaccactgcaccaaggtcatgctaaaatgctgaatgctctttgttttcagATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTCTTCAGGAAGAAGTTTAG
tgctctttgttttc CT-rich tract
tttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaacttattgcatgttgtgagatgcagttatcactccaccttgcacactaaccactgcaccaaggtcatgctaaaatgctgaatgctctttgttttcagATGACAAAGCTGGCAATTATCCCCTGCACTGTTATACTTGAGACTCTTTTCTTCAGGAAGAAGTTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - -tgcatgt
- - - - - - - - - - -gatgcag
- - - - - - - - - - - - - - - - - - - -ccttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - -cactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaatgc