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...ggttgatttcagcacttctcaaaaaaatacatggtgttttcagcaattcgcattaacacaaggtttttatcctgctagtcattctcttgtctactgacagATGGGCAGAAAAGGATGTCAATCCGGCTCTGTTTTCTCGAGAGCTCATGGCACACACTTCTACTTTTCTCAAGGATGAGGAG
species | Oryza sativa |
transcript | LOC_Os01g07090.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGAACGGCGATGATGGTGGAGTGTTTGCCGTCGCAGATGGAGTTTCAGG ATGGGCAGAAAAGGATGTCAATCCGGCTCTGTTTTCTCGAGAGCTCATGGCEST: gi|88305014|gb|CI566068.1|CI566068
genomic: GTGAACGGCGATGATGGTGGAGTGTTTGCCGTCGCAGATGGAGTTTCAGGgtacaccatc ... ctactgacagATGGGCAGAAAAGGATGTCAATCCGGCTCTGTTTTCTCGAGAGCTCATGGC
EST: GTGAACGGCGATGATGGTGGAGTGTTTGCCGTCGCAGATGGAGTTTCAGG ATGGGCAGAAAAGGATGTCAATCCGGCTCTGTTTTCTCGAGAGCTCATGGCEST: gi|86596621|gb|CI286534.1|CI286534
genomic: GTGAACGGCGATGATGGTGGAGTGTTTGCCGTCGCAGATGGAGTTTCAGGgtacaccatc ... ctactgacagATGGGCAGAAAAGGATGTCAATCCGGCTCTGTTTTCTCGAGAGCTCATGGC
EST: GTGAACGGCGATGATGGTGGAGTGTTTGCCGTCGCAGATGGAGTTTCAGG ATGGGCAGAAAAGGATGTCAATCCGGCTCTGTTTTCTCGAGAGCTCATGGCEST: gi|88403452|gb|CI573175.1|CI573175
genomic: GTGAACGGCGATGATGGTGGAGTGTTTGCCGTCGCAGATGGAGTTTCAGGgtacaccatc ... ctactgacagATGGGCAGAAAAGGATGTCAATCCGGCTCTGTTTTCTCGAGAGCTCATGGC
EST: GTGAACGGCGATGATGGTGGAGTGTTTGCCGTCGCAGATGGAGTTTCAGG ATGGGCAGAAAAGGATGTCAATCCEST: gi|117230125|gb|CT846221.1|CT846221
genomic: GTGAACGGCGATGATGGTGGAGTGTTTGCCGTCGCAGATGGAGTTTCAGGgtacaccatc ... ctactgacagATGGGCAGAAAAGGATGTCAATCC
EST: GTGAACGGCGATGATGGTGGAGTGTTTGCCGTCGCAGATGGAGTTTCAGG ATGGGCAGAAAAGGATGTCAATCCGGCTCTGTTTTCTCGAGAGCTCATGGCEST: gi|88349839|gb|CI634374.1|CI634374
genomic: GTGAACGGCGATGATGGTGGAGTGTTTGCCGTCGCAGATGGAGTTTCAGGgtacaccatc ... ctactgacagATGGGCAGAAAAGGATGTCAATCCGGCTCTGTTTTCTCGAGAGCTCATGGC
EST: GTGAACGGCGATGATGGTGGAGTGTTTGCCGTCGCAGATGGAGTTTCAGG ATGGGCAGAAAAGGATGTCAATCCGGCTCTGTTTTCTCGAGAGCTCATGGCEST: gi|88403396|gb|CI573119.1|CI573119
genomic: GTGAACGGCGATGATGGTGGAGTGTTTGCCGTCGCAGATGGAGTTTCAGGgtacaccatc ... ctactgacagATGGGCAGAAAAGGATGTCAATCCGGCTCTGTTTTCTCGAGAGCTCATGGC
EST: GTGAACGGCGATGATGGTGGAGTGTTTGCCGTCGCAGATGGAGTTTCAGG ATGGGCAGAAAAGGATGTCAATCCGGCTCTGEST: gi|55413991|gb|CV726367.1|CV726367
genomic: GTGAACGGCGATGATGGTGGAGTGTTTGCCGTCGCAGATGGAGTTTCAGGgtacaccatc ... ctactgacagATGGGCAGAAAAGGATGTCAATCCGGCTCTG
EST: GTGAACGGCGATGATGGTGGAGTGTTTGCCGTCGCAGATGGAGTTTCAGG ATGGGCAGAAAAGGATGTCAATCCGGCTCTGTTTTCTCGAGAGCTCATGGCEST: gi|13420770|gb|AU174860.1|AU174860
genomic: GTGAACGGCGATGATGGTGGAGTGTTTGCCGTCGCAGATGGAGTTTCAGGgtacaccatc ... ctactgacagATGGGCAGAAAAGGATGTCAATCCGGCTCTGTTTTCTCGAGAGCTCATGGC
EST: GTGAACGGCGATGATGGTGGAGTGTTTGCCGTCGCAGATGGAGTTTCAGG ATGGGCAGAAAAGGATGTCAATCCGGCTCTGTTTTCTCGAGAGCTCATGGCEST: gi|88355634|gb|CI628918.1|CI628918
genomic: GTGAACGGCGATGATGGTGGAGTGTTTGCCGTCGCAGATGGAGTTTCAGGgtacaccatc ... ctactgacagATGGGCAGAAAAGGATGTCAATCCGGCTCTGTTTTCTCGAGAGCTCATGGC
EST: GTGAACGGCGATGATGGTGGAGTGTTTGCCGCCGCAGATGGAGTNTCAGG ATGGGCAGAAAAGGATGTCAATCCGGCTCTGTTTCCTCGAGAGCTAATGGCEST: gi|29641053|gb|CB646060.1|CB646060
genomic: GTGAACGGCGATGATGGTGGAGTGTTTGCCGTCGCAGATGGAGTTTCAGGgtacaccatc ... ctactgacagATGGGCAGAAAAGGATGTCAATCCGGCTCTGTTTTCTCGAGAGCTCATGGC
EST: GTGAACGGCGATGATGGTGGAGTGTTTGCCGTCGCAGATGGAGTTTCAGG ATGGGCAGAAAAGGATGTCAATCCGGCTCTGTTTTCTCGAGAGCTCATGGCEST: gi|88329864|gb|CI651537.1|CI651537
genomic: GTGAACGGCGATGATGGTGGAGTGTTTGCCGTCGCAGATGGAGTTTCAGGgtacaccatc ... ctactgacagATGGGCAGAAAAGGATGTCAATCCGGCTCTGTTTTCTCGAGAGCTCATGGC
EST: GTGAACGGCGATGATGGTGGAGTGTTTGCCGTCGCAGATGGAGTTTCAGG ATGGGCAGAAAAGGATGTCAATCCGGC
genomic: GTGAACGGCGATGATGGTGGAGTGTTTGCCGTCGCAGATGGAGTTTCAGGgtacaccatc ... ctactgacagATGGGCAGAAAAGGATGTCAATCCGGC
attcgcattaacacaaggtttttatcctgctagtcattctcttgtctactgacagATGGGCAGAAAAGGATGTCAATCCGGCTCTGTTTTCTCGAGAGCTCATGGCACACACTTCTACTTTTCTCAAGGATGAGGAG
cattaac putative branch site (score: 24)
tcattctcttgtct putative PPT
tttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggttgatttcagcacttctcaaaaaaatacatggtgttttcagcaattcgcattaacacaaggtttttatcctgctagtcattctcttgtctactgacagATGGGCAGAAAAGGATGTCAATCCGGCTCTGTTTTCTCGAGAGCTCATGGCACACACTTCTACTTTTCTCAAGGATGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - -ttcagca
- - - - - - - - - -caaaaaa
- - - - - - - - - - - - - atacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -acacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattctc