1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' |
gtttgtgttgaacaatttgctagccatttctactgggatttgatattttagttacgagtgaaatttttacttgttctaatgtgctttgtctacagTTCGGATTATGAGGACTTCATTAGGGACTTAACAAGGCAACTCTGTCGACTATCTCCTGCCAGAGTCGACAGCTACTTTGAATCTGCTATCCAG
species | Oryza sativa |
transcript | LOC_Os03g05330.1 |
intron # | 27 |
splice site | 3' |
intron type | U2 |
EST: GATGGTTTGTCTTCACTCCTCAGCAAAAAATATTTCACCTCTGATCGCCG TTCGGATTATGAGGACTTCATTAGGGACTTAACAAGGCAACTCTGTCGACTEST: gi|42591926|gb|CK738412.1|CK738412
genomic: GATGGTTTGTCTTCACTCCTCAGCAAAAAATATTTCACCTCTGATCGCCGgtttgtgttg ... ttgtctacagTTCGGATTATGAGGACTTCATTAGGGACTTAACAAGGCAACTCTGTCGACT
EST: GATGGTNTGTCTTCACTCCTCAGCAAAAAATCTTTCACCTCTGATCGCCG TTCGGATTATGAGGACTTCATTAGGGACTTAACAAGGCAACTCTGTCGACTEST: gi|33681327|gb|CF309566.1|CF309566
genomic: GATGGTTTGTCTTCACTCCTCAGCAAAAAATATTTCACCTCTGATCGCCGgtttgtgttg ... ttgtctacagTTCGGATTATGAGGACTTCATTAGGGACTTAACAAGGCAACTCTGTCGACT
EST: ANTGGTTTGTCTTCACTCCTCAGCAAAAAATATTTCACCTCTGATCGCCG TTCGGATTATGAGGACTTCATTAGGGACTTAACAAGGCAACTCTGTCGACTEST: gi|29641210|gb|CB646217.1|CB646217
genomic: A-TGGTTTGTCTTCACTCCTCAGCAAAAAATATTTCACCTCTGATCGCCGgtttgtgttg ... ttgtctacagTTCGGATTATGAGGACTTCATTAGGGACTTAACAAGGCAACTCTGTCGACT
EST: GATGGTTTGTCTTCACTCCTCAGCAAAAAATATTTCACCTCTGATCGCCG TTCGGATTATGAGGACTTCATTAGGGACTTAACAAGGCAACTCTGTCGACT
genomic: GATGGTTTGTCTTCACTCCTCAGCAAAAAATATTTCACCTCTGATCGCCGgtttgtgttg ... ttgtctacagTTCGGATTATGAGGACTTCATTAGGGACTTAACAAGGCAACTCTGTCGACT
tgatattttagttacgagtgaaatttttacttgttctaatgtgctttgtctacagTTCGGATTATGAGGACTTCATTAGGGACTTAACAAGGCAACTCTGTCGACTATCTCCTGCCAGAGTCGACAGCTACTTTGAATCTGCTATCCAG
ttctaat putative branch site (score: 14)
ctttgtct putative PPT
aaatttttacttgtt TA-rich tract