1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' |
gtttgttgccttaatctaggtccttacggggatgtttcatacgatgcaaatgccctactctgagttctttttgctaatattcttactatgctgtctcagTTTTGGACTCATTAGTTGACCCCATTGAGAAAACTATAAATCACAAACCCAAGGGCGATGCAGTGAAGCAAGAGGTTGATCGCAATGAAGACATGATTCG
species | Oryza sativa |
transcript | LOC_Os02g07120.1 |
intron # | 27 |
splice site | 3' |
intron type | U2 |
EST: TCTGATTCTCTCAAAGCTAGCAGACAAGTGCCCTTCTGCTGTTCTGGCAG TTTTGGACTCATTAGTTGACCCCATTGAGAAAACTATAAATCACAAACCCAEST: gi|2798908|gb|AA752202.1|AA752202
genomic: TCTGATTCTCTCAAAGCTAGCAGACAAGTGCCCTTCTGCTGTTCTGGCAGgtttgttgcc ... gctgtctcagTTTTGGACTCATTAGTTGACCCCATTGAGAAAACTATAAATCACAAACCCA
EST: TCTGATTCTCTCAAAGCTAGCAGACA-GTGCC-TTCTGCTGTTCTGGCAG TTT-GGACTCATTAGTTGACCC-ATTGAGAAEST: gi|86478996|gb|CI121629.1|CI121629
genomic: TCTGATTCTCTCAAAGCTAGCAGACAAGTGCCCTTCTGCTGTTCTGGCAGgtttgttgcc ... gctgtctcagTTTTGGACTCATTAGTTGACCCCATTGAGAA
EST: TCTGATTCTCTCAAAGCTAGCAGACAAGTGCCCTTCTGCTGTTCTGGCAG TTTTGGACTCATTAGTTGACCCCATTGAGAAAACTATAAATCACAAACCCAEST: gi|38473429|gb|CF957561.1|CF957561
genomic: TCTGATTCTCTCAAAGCTAGCAGACAAGTGCCCTTCTGCTGTTCTGGCAGgtttgttgcc ... gctgtctcagTTTTGGACTCATTAGTTGACCCCATTGAGAAAACTATAAATCACAAACCCA
EST: TCTGATTCTCTCAAAGCTAGCAGACAAGTGCCCTTCTGCTGTTCTGGCAG TTTTGGACTCATTAGTTGACCCCATTGAGAAAACTAEST: gi|426829|gb|D22903.1|D22903
genomic: TCTGATTCTCTCAAAGCTAGCAGACAAGTGCCCTTCTGCTGTTCTGGCAGgtttgttgcc ... gctgtctcagTTTTGGACTCATTAGTTGACCCCATTGAGAAAACTA
EST: GTGCCCTTNTGCTGTTCTGGCAG TTTTGGACTCATTAGTTGACCCCATTGAGAAAACTATAAATCACAAACCCAEST: gi|66914920|gb|CX101768.1|CX101768
genomic: GTGCCCTTCTGCTGTTCTGGCAGgtttgttgcc ... gctgtctcagTTTTGGACTCATTAGTTGACCCCATTGAGAAAACTATAAATCACAAACCCA
EST: TCTGATTCTCTCAAAGCTAGCAGACAAGTGCCCTTCTGCTGTTCTGGCAG TTTTGGACTCATTAGTTGACCCCATTGAGAAAACTATTAATCACAAACCCAEST: gi|163919951|gb|EG711701.1|EG711701
genomic: TCTGATTCTCTCAAAGCTAGCAGACAAGTGCCCTTCTGCTGTTCTGGCAGgtttgttgcc ... gctgtctcagTTTTGGACTCATTAGTTGACCCCATTGAGAAAACTATAAATCACAAACCCA
EST: TCTGATTCTCTCAAAGCTAGCAGACAAGTGCCCTTCTGCTGTTCTGGCAG TTTTGGACTCATTAGTTGACCCCATTGAGAAAACTATAAATCACAAACCCAEST: gi|32948231|gb|BP184803.1|BP184803
genomic: TCTGATTCTCTCAAAGCTAGCAGACAAGTGCCCTTCTGCTGTTCTGGCAGgtttgttgcc ... gctgtctcagTTTTGGACTCATTAGTTGACCCCATTGAGAAAACTATAAATCACAAACCCA
EST: TCTGATTCTCTCAAAGCTAGCAGACAAGTGCCCTTCTGCTGTTCTGGCAG TTTTGGACTCATTAGTTGACCCCATTGAGAAAEST: gi|58603061|gb|CK013589.1|CK013589
genomic: TCTGATTCTCTCAAAGCTAGCAGACAAGTGCCCTTCTGCTGTTCTGGCAGgtttgttgcc ... gctgtctcagTTTTGGACTCATTAGTTGACCCCATTGAGAAA
EST: TCTGATTCTCTCGAAGCTAGCAGACAAGTGCCCTTCTGCTGTTCTGGCAG TTTTGGACTCATTAGTTGACCCCATTGAGAAAACTATAAATCACAAACCCA
genomic: TCTGATTCTCTCAAAGCTAGCAGACAAGTGCCCTTCTGCTGTTCTGGCAGgtttgttgcc ... gctgtctcagTTTTGGACTCATTAGTTGACCCCATTGAGAAAACTATAAATCACAAACCCA
tgcaaatgccctactctgagttctttttgctaatattcttactatgctgtctcagTTTTGGACTCATTAGTTGACCCCATTGAGAAAACTATAAATCACAAACCCAAGGGCGATGCAGTGAAGCAAGAGGTTGATCGCAATGAAGACATGATTCG
ttcttac putative branch site (score: 47)
ctgtctc putative PPT
taatattcttactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgttgccttaatctaggtccttacggggatgtttcatacgatgcaaatgccctactctgagttctttttgctaatattcttactatgctgtctcagTTTTGGACTCATTAGTTGACCCCATTGAGAAAACTATAAATCACAAACCCAAGGGCGATGCAGTGAAGCAAGAGGTTGATCGCAATGAAGACATGATTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA