Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagccaaccctcacaagtttttgttccctatgcactcaatgctgttataaaatgattactagtttgttgaagcattacaaaggtaactgtttccccgaaattgcagGAATGGATCCCATAAACGAGAGGAAGATGTTCCAGCAGCTTGTGAGAGCAGCCAGTCAGCCAAACACTCCACAGTTTGTGACAGTACTCTTAGCATTTCA

Basic information

species Oryza sativa
transcript LOC_Os05g51790.2
intron # 26
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g51790.2 (Oryza sativa), 3'ss of exon 26
lower sequence: GRMZM2G440916_T01 (Zea mays), 3'ss of exon 26
gcaagccaaccctcacaagtttttgttccctatgcactcaatgctgttataaaatgattactagtttgttgaagcattacaaaggt---aactgtttccccgaaattgcagGAATGGATCCCATAAACGAGAGGAAGATGTTCCAGCAGCTTGTGAGAGCAGCCAGTCAGCCAAACACTCCACAGTTTGTGACAGTACTCTTAGCATTTCA
                  ||       |   ||    ||| | ||   |    |||| | |||  ||||  | | |||     |||   |    ||   |||||  |||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||| ||||| ||    ||||| || ||                           
------------------gtaacacaactgaattgcttcatttctccaactgtatgactgctaacttgtataggtattgaggtggtctaatgcattcatccgaatatgcagGAATGGACCCCATAAACGAGAGGAAAATGTTTCAGCAGCTTGTCAGAGCTGCCAGCCAAATTAACACGCCGCA---------------------------

upper sequence: LOC_Os05g51790.2 (Oryza sativa), 3'ss of exon 26
lower sequence: AT5G15920.1 (Arabidopsis thaliana), 3'ss of exon 2
gcaagccaaccctcacaagtttttgttccctatgcactcaatgctgttataaaatgattactagtttgttgaagcattacaaaggtaactgtttccccgaaattgcagGAATGGATCCCATAAACGAGAGGAAGATGTTCCAGCAGCTTGTGAGAGCAGCCAGTCAGCCAAACACTCCACAGTTTGTGACAGTACTCTTAGCATTTCA
    |  ||   |   ||  |||| ||    ||| |   ||  ||||    |||          || ||  |||  |   |||  ||    ||| |  |    |||||| |||||||||||||| || ||||||||||| || ||  | || ||||| || ||||| |||||||| |||||                           
----gtaaaaagtgtaaatgttttttttttaatgta---aaaactgtctcgaaaca--------ttagtcaaagtctcttaaaaatatacatttgcttg----tgcagGTATGGATCCCATAAATGAAAGGAAGATGTTTCAACAATTGGTTAGAGCTGCTAGTCAACCAAACACACCACA---------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgattactagtttgttgaagcattacaaaggtaactgtttccccgaaattgcagGAATGGATCCCATAAACGAGAGGAAGATGTTCCAGCAGCTTGTGAGAGCAGCCAGTCAGCCAAACACTCCACAGTTTGTGACAGTACTCTTAGCATTTCA
                             aggtaac  putative branch site (score: 3)
                                      tttccccg  putative PPT
                      attacaaa  TA-rich tract