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21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' |
...tttcaccgtagtgtttcaattatttatctccaaatgttagaagctggtggcagtaacaaagctacggttgcaaacttttctgttgctttttttgcttcagGTTTCGATGAATACGAAAATGAGGTCCAATGCGTTTGCAGTTTATGGTGCTTTAAGTGCCTATGGTGTAGGTTCACAGCAGTTTCTTGAGCAG
species | Oryza sativa |
transcript | LOC_Os03g05330.1 |
intron # | 24 |
splice site | 3' |
intron type | U2 |
EST: CCATTGACCCAGTTTTAATCAATCTTTTAGTAAGGCTACGCAATCTCCAG GTTTCGATGAATACGAAAATGAGGTCCAATGCGTTTGCAGCTTATGGTGCTEST: gi|218481123|gb|FG968746.1|FG968746
genomic: CCATTGACCCAGTTTTAATCAATCTTTTAGTAAGGCTACGCAATCTCCAGgtaatcattt ... tttgcttcagGTTTCGATGAATACGAAAATGAGGTCCAATGCGTTTGCAGTTTATGGTGCT
EST: CCATTGACCCAGTTTTAATCAATCTTTTAGTAAGGCTACGCAATCTCCAG GTTTCGATGAATACGAAAATGAGGTCCAATGCGTTTGCAGCTTATGGTGCTEST: gi|42591926|gb|CK738412.1|CK738412
genomic: CCATTGACCCAGTTTTAATCAATCTTTTAGTAAGGCTACGCAATCTCCAGgtaatcattt ... tttgcttcagGTTTCGATGAATACGAAAATGAGGTCCAATGCGTTTGCAGTTTATGGTGCT
EST: CCATTGACCCAGTTTTAATCAATCTTTTAGTAAGGCTACGCAATCTCCAG GTTTCGATGAATACGAAAATGAGGTCCAATGCGTTTGCAGCTTATGGTGCTEST: gi|58659604|gb|CK048284.1|CK048284
genomic: CCATTGACCCAGTTTTAATCAATCTTTTAGTAAGGCTACGCAATCTCCAGgtaatcattt ... tttgcttcagGTTTCGATGAATACGAAAATGAGGTCCAATGCGTTTGCAGTTTATGGTGCT
EST: ATCAATCTTTTAGTAAGGCTACGCAATCTCCAG GTTTCGATGAATACGAAAATGAGGTCCAATGCGTTTGCAGCTTATGGTGCTEST: gi|33681327|gb|CF309566.1|CF309566
genomic: ATCAATCTTTTAGTAAGGCTACGCAATCTCCAGgtaatcattt ... tttgcttcagGTTTCGATGAATACGAAAATGAGGTCCAATGCGTTTGCAGTTTATGGTGCT
EST: AATCAATCTTTTAGTAAGGCTACGCAATCTCCAG GTTTCGATGAATACGAAAATGAGGTCCAATGCGTTTGCAGTTTATGGTGCT
genomic: AATCAATCTTTTAGTAAGGCTACGCAATCTCCAGgtaatcattt ... tttgcttcagGTTTCGATGAATACGAAAATGAGGTCCAATGCGTTTGCAGTTTATGGTGCT
ggtggcagtaacaaagctacggttgcaaacttttctgttgctttttttgcttcagGTTTCGATGAATACGAAAATGAGGTCCAATGCGTTTGCAGTTTATGGTGCTTTAAGTGCCTATGGTGTAGGTTCACAGCAGTTTCTTGAGCAG
cagtaac putative branch site (score: 5)
cttttctgttgctttt putative PPT
ttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcaccgtagtgtttcaattatttatctccaaatgttagaagctggtggcagtaacaaagctacggttgcaaacttttctgttgctttttttgcttcagGTTTCGATGAATACGAAAATGAGGTCCAATGCGTTTGCAGTTTATGGTGCTTTAAGTGCCTATGGTGTAGGTTCACAGCAGTTTCTTGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
-ttcaccg
- - - - - -tgtttca
- - - - - - - - - - - - - - - - - - - - - gctggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - -taacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cggttgc