1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' |
gtgaaatgggattactatctaaactattttcttcattttgttctactgtcatttaatgattagaggtcttttggttcattccttgcgtttttttttgtagGAACGCACATCTAGTCCTGCTGCAAACACAAGAGCTACAGTTGCCATTGCTATAAAATATTCAATTGTTGAACGGCCTGGAAAAATAGATGAAATTATGT
species | Oryza sativa |
transcript | LOC_Os02g07120.1 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: TAGGCAAAATTGCTCTGATTGAACCTAGGAAATTAATCCCTGCTCTAAAG GAACGCACATCTAGTCCTGCTGCAAACACAAGAGCTACAGTTGCCATTGCTEST: gi|38473429|gb|CF957561.1|CF957561
genomic: TAGGCAAAATTGCTCTGATTGAACCTAGGAAATTAATCCCTGCTCTAAAGgtgaaatggg ... ttttttgtagGAACGCACATCTAGTCCTGCTGCAAACACAAGAGCTACAGTTGCCATTGCT
EST: TAGGC-AAATTGCTCTGATTGAACCTAGGAAATTAATCCCTGCTCTAAAG GAACGCACATCTAGTCCTGCTGCAAACACAAGAGCTACAGTTGCCATTGCTEST: gi|66914920|gb|CX101768.1|CX101768
genomic: TAGGCAAAATTGCTCTGATTGAACCTAGGAAATTAATCCCTGCTCTAAAGgtgaaatggg ... ttttttgtagGAACGCACATCTAGTCCTGCTGCAAACACAAGAGCTACAGTTGCCATTGCT
EST: TAGGCAAAATTGCTCTGATTGAACCTAGGAAATTAATCCCTGCTCTAAAG GAACGCACATCTAGTCCTGCTGCAAACACAAGAGCTACAGTTGCCATTGCTEST: gi|32948231|gb|BP184803.1|BP184803
genomic: TAGGCAAAATTGCTCTGATTGAACCTAGGAAATTAATCCCTGCTCTAAAGgtgaaatggg ... ttttttgtagGAACGCACATCTAGTCCTGCTGCAAACACAAGAGCTACAGTTGCCATTGCT
EST: TAGGCAAAATTGCTCTGATTGAACCTAGGAAATTAATCCCTGCTCTAAAG GAACGCACATCTAGTCCTGCTGCAAACACAAGAGCTACAGTTGCCATTGCTEST: gi|33796960|gb|CF324343.1|CF324343
genomic: TAGGCAAAATTGCTCTGATTGAACCTAGGAAATTAATCCCTGCTCTAAAGgtgaaatggg ... ttttttgtagGAACGCACATCTAGTCCTGCTGCAAACACAAGAGCTACAGTTGCCATTGCT
EST: TAGGCAAAATTGCTCTGATTGAACCTAGGAAATTAATCCCTGCTCTAAAG GAACGCACATCTAGTCCTGCTGCAAACACAAGAGCTACAGTTGCCATTGCTEST: gi|58667112|gb|CK055798.1|CK055798
genomic: TAGGCAAAATTGCTCTGATTGAACCTAGGAAATTAATCCCTGCTCTAAAGgtgaaatggg ... ttttttgtagGAACGCACATCTAGTCCTGCTGCAAACACAAGAGCTACAGTTGCCATTGCT
EST: TAGGCAAAATTGCTCTGATTGAACCTA-GAAATTAATCCCTGCTCTAAAG GAACGCACATCTAGTCCTGCTGCAAACACAAGAGCTACAGTTGCCATTGCTEST: gi|29625622|gb|CB630633.1|CB630633
genomic: TAGGCAAAATTGCTCTGATTGAACCTAGGAAATTAATCCCTGCTCTAAAGgtgaaatggg ... ttttttgtagGAACGCACATCTAGTCCTGCTGCAAACACAAGAGCTACAGTTGCCATTGCT
EST: TAGGCAAAATTGCTCTGATTGAACCTAGGAAATTAATCCCTGCTCTAAAG GAACGCACATCTAGTCCTGCTGCAAACACAAGAGCTACAGTTGCCATTGCT
genomic: TAGGCAAAATTGCTCTGATTGAACCTAGGAAATTAATCCCTGCTCTAAAGgtgaaatggg ... ttttttgtagGAACGCACATCTAGTCCTGCTGCAAACACAAGAGCTACAGTTGCCATTGCT
ctgtcatttaatgattagaggtcttttggttcattccttgcgtttttttttgtagGAACGCACATCTAGTCCTGCTGCAAACACAAGAGCTACAGTTGCCATTGCTATAAAATATTCAATTGTTGAACGGCCTGGAAAAATAGATGAAATTATGT
atttaat putative branch site (score: 33)
ttcattccttgcgttt putative PPT
atttaatgattaga TA-rich tract