1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...ttgcatttacatggaaaatactgttcttgtcaaattcctaatacttcgtagcatgtttcttctcttcatctgtttttattctaacgtgtgtttgttctagGGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTTTGCAGAGATTGCTGCTCTTCGATTCCTTAGTTCTCAG
species | Oryza sativa |
transcript | LOC_Os04g14654.1 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: AACAGAGTATTGACAG GGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTTEST: gi|86599219|gb|CI355836.1|CI355836
genomic: AACAGAGTATTGACAGgtaaattttc ... tttgttctagGGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTT
EST: TCTTCATTGGATGTACACCAAGGTTTGGGGCTTCAACAGAGTATTGACAG GGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTTEST: gi|88269427|gb|CI380725.1|CI380725
genomic: TCTTCATTGGATGTACACCAAGGTTTGGGGCTTCAACAGAGTATTGACAGgtaaattttc ... tttgttctagGGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTT
EST: TCTTCATTGGATGTACACCAA-GTTT-GGGCTTCAACAGAGTATTGACAG GGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTTEST: gi|88384593|gb|CI554085.1|CI554085
genomic: TCTTCATTGGATGTACACCAAGGTTTGGGGCTTCAACAGAGTATTGACAGgtaaattttc ... tttgttctagGGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTT
EST: ATTGGATGTACACCAAGGTTTGGGGCTTCAACAGAGTATTGACAG GGTTGGANATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTTEST: gi|58603195|gb|CK013723.1|CK013723
genomic: ATTGGATGTACACCAAGGTTTGGGGCTTCAACAGAGTATTGACAGgtaaattttc ... tttgttctagGGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTT
EST: TCTTCATTGGATGTACACCAAGGTTTGGGGCTTCAACAGAGTATTGACAG GGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTTEST: gi|86846270|gb|CI339858.1|CI339858
genomic: TCTTCATTGGATGTACACCAAGGTTTGGGGCTTCAACAGAGTATTGACAGgtaaattttc ... tttgttctagGGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTT
EST: TCTTCATTGGATGTACACCAAGGTTTGGGGCTTCAACAGAGTATTGACAG GGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTTEST: gi|88273383|gb|CI393789.1|CI393789
genomic: TCTTCATTGGATGTACACCAAGGTTTGGGGCTTCAACAGAGTATTGACAGgtaaattttc ... tttgttctagGGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTT
EST: TCTTCATTGGATGTACACCAAGGTTTGGGGCTTCAACAGAGTATTGACAG GGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTTEST: gi|88460269|gb|CI529344.1|CI529344
genomic: TCTTCATTGGATGTACACCAAGGTTTGGGGCTTCAACAGAGTATTGACAGgtaaattttc ... tttgttctagGGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTT
EST: CTTCATTGGATGTACACCAA-GTTTGNGGGCTTCAACAGAGTATTGACAG GGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTTEST: gi|88250349|gb|CI348579.1|CI348579
genomic: CTTCATTGGATGTACACCAAGGTTTG-GGGCTTCAACAGAGTATTGACAGgtaaattttc ... tttgttctagGGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTT
EST: TCTTCATTGGATGTACACCAAGGTTTGGGGCTTCAACAGAGTATTGACAG GGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGTTTACTTTEST: gi|86432914|gb|CI093257.1|CI093257
genomic: TCTTCATTGGATGTACACCAAGGTTTGGGGCTTCAACAGAGTATTGACAGgtaaattttc ... tttgttctagGGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTT
EST: TCTTCATTGGATGTACACCAAGGTTTGGGGCTTCAACAGAGTATTGACAG GGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTT
genomic: TCTTCATTGGATGTACACCAAGGTTTGGGGCTTCAACAGAGTATTGACAGgtaaattttc ... tttgttctagGGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTT
tcgtagcatgtttcttctcttcatctgtttttattctaacgtgtgtttgttctagGGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTTTGCAGAGATTGCTGCTCTTCGATTCCTTAGTTCTCAG
ttctaac putative branch site (score: 1)
tttgttct putative PPT
tgtttttattctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcatttacatggaaaatactgttcttgtcaaattcctaatacttcgtagcatgtttcttctcttcatctgtttttattctaacgtgtgtttgttctagGGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTTTGCAGAGATTGCTGCTCTTCGATTCCTTAGTTCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT