1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' |
gtttgaaagaaatcgtcacctttttagatgcaaacttttttagttttctagctcaagattgtgatggcttctctaaattgtcccatgctccattgttctttctaatgctgcagCTTGAAGATGGGGACATAATATGTTTCCAAAAGTCACCTGTGTCAGATGGGGAGACTCAAGTGCGGTATCCAGACGTTCCTTCATTTTTGGAGTATGTGC
species | Oryza sativa |
transcript | LOC_Os12g30540.1 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: ATGTGATGTGCGAACACATTGACAAGAAACTAACTTTCCGTTCCAGTCAG CTTGAAGATGGGGACATAATATGTTTCCAAAAGTCACCTGTGTCAGATGGGEST: gi|58678676|gb|CK067363.1|CK067363
genomic: ATGTGATGTGCGAACACATTGACAAGAAACTAACTTTCCGTTCCAGTCAGgtttgaaaga ... aatgctgcagCTTGAAGATGGGGACATAATATGTTTCCAAAAGTCACCTGTGTCAGATGGG
EST: ATGTGATGTGCGAACACATTGACAAGAAACTAACTTTCCGTTCCAGTCAG CTTGAAGATGGGGACATAATATGTTTCCAAAAGTCACCTGTGTCAGATGGGEST: gi|29637181|gb|CB642190.1|CB642190
genomic: ATGTGATGTGCGAACACATTGACAAGAAACTAACTTTCCGTTCCAGTCAGgtttgaaaga ... aatgctgcagCTTGAAGATGGGGACATAATATGTTTCCAAAAGTCACCTGTGTCAGATGGG
EST: ATGTGATGTGCGAACACATTGACAAGAAACTAACTTTCCGTTCCAGTCAG CTTGAAGATGGGGACATAATATGTTTCCAAAAGTCACCTGTGTCAGATGGGEST: gi|29614412|gb|CB619425.1|CB619425
genomic: ATGTGATGTGCGAACACATTGACAAGAAACTAACTTTCCGTTCCAGTCAGgtttgaaaga ... aatgctgcagCTTGAAGATGGGGACATAATATGTTTCCAAAAGTCACCTGTGTCAGATGGG
EST: ATGTGATGTGCGAACACATTGACAAGAAACTAACTTTCCGTTCCAGTCAG CTTGAAGATGGGGACATAATATGTTTCCAAAAGTCACCTGTGTTAGATGGGEST: gi|2309706|gb|C25861.1|C25861
genomic: ATGTGATGTGCGAACACATTGACAAGAAACTAACTTTCCGTTCCAGTCAGgtttgaaaga ... aatgctgcagCTTGAAGATGGGGACATAATATGTTTCCAAAAGTCACCTGTGTCAGATGGG
EST: ATGTGATGTGCGAACACATTGACAAGAAACTAACTTTCCGTTCCAGTCAG CTTGAAGATGGGGACATAATATGTTTCCAAAAGTCACCTGTGTCAGATGGGEST: gi|88690794|gb|CI734873.1|CI734873
genomic: ATGTGATGTGCGAACACATTGACAAGAAACTAACTTTCCGTTCCAGTCAGgtttgaaaga ... aatgctgcagCTTGAAGATGGGGACATAATATGTTTCCAAAAGTCACCTGTGTCAGATGGG
EST: ATGTGATGTGCGAACACATTGACAAGAAACTAACTTTCCGTTCCAGTCAG CTTGAAGATGGGGA
genomic: ATGTGATGTGCGAACACATTGACAAGAAACTAACTTTCCGTTCCAGTCAGgtttgaaaga ... aatgctgcagCTTGAAGATGGGGA
ttgtgatggcttctctaaattgtcccatgctccattgttctttctaatgctgcagCTTGAAGATGGGGACATAATATGTTTCCAAAAGTCACCTGTGTCAGATGGGGAGACTCAAGTGCGGTATCCAGACGTTCCTTCATTTTTGGAGTATGTGC
ttctaat putative branch site (score: 36)
ttctttcta CT-rich tract
tctaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgaaagaaatcgtcacctttttagatgcaaacttttttagttttctagctcaagattgtgatggcttctctaaattgtcccatgctccattgttctttctaatgctgcagCTTGAAGATGGGGACATAATATGTTTCCAAAAGTCACCTGTGTCAGATGGGGAGACTCAAGTGCGGTATCCAGACGTTCCTTCATTTTTGGAGTATGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG