1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatgctgagcaagtttaatggcatcttatgttgttttctctgagtccatgtgaactaactcaaatgttggtctgccttaggtaacaaagTTGAGAAGGTCTGTGATTTGTGCAGCATTACACTGAACAAAAATGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCATTG
species | Oryza sativa |
transcript | LOC_Os12g22030.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTG GEST: gi|58683023|gb|CK071710.1|CK071710
genomic: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTGgtatgctgag ... ggtaacaaag-
EST: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTG GEST: gi|87027893|gb|CI276249.1|CI276249
genomic: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTGgtatgctgag ... ggtaacaaag-
EST: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTGGTAACTAAGEST: gi|88731473|gb|CI755086.1|CI755086
genomic: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGC-T---T-G--ACT--Ggtatgctgag ... gg
EST: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTGGTAACAAAGEST: gi|58589560|gb|CF987868.1|CF987868
genomic: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGAC---T------Ggtatgctgag ... gg
EST: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTG GEST: gi|58589560|gb|CF987868.1|CF987868
genomic: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTGgtatgctgag ... ggtaacaaag-
EST: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTG GEST: gi|86520924|gb|CI161130.1|CI161130
genomic: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTGgtatgctgag ... ggtaacaaag-
EST: CCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGGCTGGTAACAAAG TTGAGAAGGTCTGTGATTTGTGCAGCATTACACTGAACCAAAATGCTGTCEST: gi|29661231|gb|CB657506.1|CB657506
genomic: CCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGC-T---T-G--AC--TGgtatgctgag ... ggtaacaaagTTGAGAAGGTCTGTGATTTGTGCAGCATTACACTGAACAAAAATGCTGTC
EST: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTG GEST: gi|29661231|gb|CB657506.1|CB657506
genomic: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTGgtatgctgag ... ggtaacaaag-
EST: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTG G
genomic: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTGgtatgctgag ... ggtaacaaag-
tttctctgagtccatgtgaactaactcaaatgttggtctgccttaggtaacaaagTTGAGAAGGTCTGTGATTTGTGCAGCATTACACTGAACAAAAATGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCATTG
aaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctgagcaagtttaatggcatcttatgttgttttctctgagtccatgtgaactaactcaaatgttggtctgccttaggtaacaaagTTGAGAAGGTCTGTGATTTGTGCAGCATTACACTGAACAAAAATGCTGTCTTTGGGGATAGCAGTGCAATGTCACCTGGTGGTGTCCGCATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG