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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggaatctggctctttcatcatcgctaaatctgattaaagatgtgtgtttttgtgtttttttgtgctgaagtgcgaatctgtgatggttttggatgatgcgaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGGGTGGCCCTCGATGAGGTCGGCCCCGGGCTGTTCGATGCGCTCTTCGCGA

Basic information

species Oryza sativa
transcript LOC_Os11g28300.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g28300.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G151863_T01 (Zea mays), 3'ss of exon 2
gtgaggaatctggctctttcat-catcgctaaatctg----attaaagatgtgtgtttttgtgtttttttgtgctgaagtgcgaatctgtgatggttttggatgatgcgaattgt-tagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGGGTGGCCCTCGATGAGGTCGGCCCCGGGCTGTTCGATGCGCTCTTCGCGA
||||| |||| |  |  |||    | |   || ||||    ||| | || ||  ||||| ||||   | |||     | |    | |  ||||    |  | || ||| | ||   ||||||||||||||||| ||||||||||| ||| ||| |||||| || ||||||||||| || || ||||| || || ||||||||||| || ||||| || |
gtgagaaatccgattacttcgcgtagcaagaactctgttcgattgaggacgt-cgttttggtgtcaatctgtc----aattttgaccgctgatttgctctggtggtgccattttcctagGGGTTCTTGCACGGCCTGAAGAAGGATGCACTGGCGGAGGGCGATCATGGGGTGGCACTAGACGAGGTTGGACCGGGGCTGTTCGACGCACTCTTTGCCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33804188|gb|CF327969.1|CF327969
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCG-GCAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|88569792|gb|CI660967.1|CI660967
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|3766721|gb|AU030831.1|AU030831
EST:     ACGG-GAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGNC-ATNGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|88337293|gb|CI629583.1|CI629583
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|88307114|gb|CI640549.1|CI640549
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|88307842|gb|CI646277.1|CI646277
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|88380713|gb|CI634738.1|CI634738
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|86898267|gb|CI290843.1|CI290843
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|8335723|gb|BE040531.1|BE040531
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGG
EST: gi|88426536|gb|CI579365.1|CI579365
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|88349790|gb|CI634325.1|CI634325
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAAAAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|88353912|gb|CI634703.1|CI634703
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|88851485|gb|CI670925.1|CI670925
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|88324987|gb|CI645001.1|CI645001
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|88386892|gb|CI629219.1|CI629219
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAACAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|88403187|gb|CI570928.1|CI570928
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTTTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCCGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|88390701|gb|CI609326.1|CI609326
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGAACATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|88333978|gb|CI645392.1|CI645392
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|44678067|gb|CR291501.1|CR291501
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|88415654|gb|CI591434.1|CI591434
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|88401571|gb|CI588512.1|CI588512
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|88311914|gb|CI577520.1|CI577520
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGT-CAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|88307697|gb|CI644736.1|CI644736
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|88335550|gb|CI642774.1|CI642774
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|88723759|gb|CI747269.1|CI747269
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|218479784|gb|FG960708.1|FG960708
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCA-GG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|88372059|gb|CI641694.1|CI641694
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|33677157|gb|CF305396.1|CF305396
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|66912648|gb|CX099496.1|CX099496
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|58589289|gb|CF987597.1|CF987597
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|88348558|gb|CI634153.1|CI634153
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|88413071|gb|CI578922.1|CI578922
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|42592205|gb|CK738691.1|CK738691
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|88400467|gb|CI593542.1|CI593542
EST:     ACGGGGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|88422996|gb|CI615296.1|CI615296
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAACAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|87023908|gb|CI288261.1|CI288261
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|88340660|gb|CI647464.1|CI647464
EST:     ACTGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|33687017|gb|CF315256.1|CF315256
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|88315632|gb|CI615504.1|CI615504
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|88353597|gb|CI632988.1|CI632988
EST:     ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGG                         GGGTTCTTGCACGGGCTGAACAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: ACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 37 (upstream exon), 43 (downstream exon)
Score: 6

GCGGTCGCCGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGgtgaggaatc ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGGGTGGCCCTCGATGAGGTCGGCCCCGGGCTGTTCGATGCGCTCTTCGCGA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttgtgctgaagtgcgaatctgtgatggttttggatgatgcgaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGGGTGGCCCTCGATGAGGTCGGCCCCGGGCTGTTCGATGCGCTCTTCGCGA
                                              aattgtta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgaggaatctggctctttcatcatcgctaaatctgattaaagatgtgtgtttttgtgtttttttgtgctgaagtgcgaatctgtgatggttttggatgatgcgaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGGGTGGCCCTCGATGAGGTCGGCCCCGGGCTGTTCGATGCGCTCTTCGCGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT