1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttcgtcttaaatactttctgggatttattttcaatgtccccatacaacttttggtttgtcatgttttatagcatgctcataaatgtttgctgaagtacagACAAGCCAAGGATACACTCAAGCTCCTAAAGAAACGCCTGGGAAACAAGAATTCAAAAGTGCAAATTCTGACGCTTTAT
species | Oryza sativa |
transcript | LOC_Os11g09329.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATTGGGCGGTGAACATCGAGCTCTGCGACATCATCAACATGGATCCTGG ACAAGCCAAGGAGACACTCAAGCTCCTAAAGAAACGCCTGGGAAACAAGAAEST: gi|33654658|gb|CF277272.1|CF277272
genomic: GATTGGGCGGTGAACATCGAGCTCTGCGACATCATCAACATGGATCCCGGgtctggcttc ... tgaagtacagACAAGCCAAGGATACACTCAAGCTCCTAAAGAAACGCCTGGGAAACAAGAA
EST: GATTGGGCGGTGAACATCGAGCTCTGCGACATCATCAACATGGATCCCGG ACAAGCCAAGGATACACTCAAGCTCCTAAAGAAACGCCTGGGAAACAAGAAEST: gi|88433331|gb|CI591771.1|CI591771
genomic: GATTGGGCGGTGAACATCGAGCTCTGCGACATCATCAACATGGATCCCGGgtctggcttc ... tgaagtacagACAAGCCAAGGATACACTCAAGCTCCTAAAGAAACGCCTGGGAAACAAGAA
EST: GATTGGGCGGTGAACATCGAGCTCTGCGACATCATCAACATGGATCCCGG ACAAGCCAAGGATACACTCAAGCTCCTAAAGAAACGCCTGGGAAACAAGAAEST: gi|58660357|gb|CK049037.1|CK049037
genomic: GATTGGGCGGTGAACATCGAGCTCTGCGACATCATCAACATGGATCCCGGgtctggcttc ... tgaagtacagACAAGCCAAGGATACACTCAAGCTCCTAAAGAAACGCCTGGGAAACAAGAA
EST: GATTGGGCGGTGAACATCGAGCTCTGCGACATCATCAACATGGATCCTGG ACAAGCCAAGGATACACTCAAGCTCCTAAAGAAACGCCTGGGAAACAAGAAEST: gi|88311167|gb|CI570241.1|CI570241
genomic: GATTGGGCGGTGAACATCGAGCTCTGCGACATCATCAACATGGATCCCGGgtctggcttc ... tgaagtacagACAAGCCAAGGATACACTCAAGCTCCTAAAGAAACGCCTGGGAAACAAGAA
EST: GATTGGGCGGTGAACATCGAGCTCTGCGACATCATCAACATGGATCC-GG ACAAGCCAAGGATACACTCAAGCTC-TAAAGAAACGCCTGGGAAACAAGAA
genomic: GATTGGGCGGTGAACATCGAGCTCTGCGACATCATCAACATGGATCCCGGgtctggcttc ... tgaagtacagACAAGCCAAGGATACACTCAAGCTCCTAAAGAAACGCCTGGGAAACAAGAA
aacttttggtttgtcatgttttatagcatgctcataaatgtttgctgaagtacagACAAGCCAAGGATACACTCAAGCTCCTAAAGAAACGCCTGGGAAACAAGAATTCAAAAGTGCAAATTCTGACGCTTTAT
atgttttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcgtcttaaatactttctgggatttattttcaatgtccccatacaacttttggtttgtcatgttttatagcatgctcataaatgtttgctgaagtacagACAAGCCAAGGATACACTCAAGCTCCTAAAGAAACGCCTGGGAAACAAGAATTCAAAAGTGCAAATTCTGACGCTTTAT
- - - - - - -ctttctg
- - - - - - - - - - - - - - - - - - - -ccataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgc