1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...cactggtctgtaatcgtcgtgagttgatggtggtcagagttggttgtaatcaaatgaactttcttttttgctttgtttccttatatatgatgatatgtagGTTGGAAGCAGGCTTGCCTTGAGCAGGAACTATGCTGCCAAGGATATCAAGTTTGGAGTTGAGGCCCGTGCTTTGATGCTGAGGGGTGTTGAGGAGTTGG
species | Oryza sativa |
transcript | LOC_Os10g32550.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAAGCCGGGAGCAGCGCTCGCCAG GTTGGAAGCAGGCTTGCCTTGAGCAGGAACTATGCTGCCAAGGATATCAAGEST: gi|88730338|gb|CI753951.1|CI753951
genomic: GCAAGCCGGGAGCAGCGCTCGCCAGgtgagcggat ... tgatatgtagGTTGGAAGCAGGCTTGCCTTGAGCAGGAACTATGCTGCCAAGGATATCAAG
EST: GCAAGCCGGGAGCAGCGCTCGCCAG GTTGGAAGCAGGCTTGCCTTGAGCAGGAACTATGCTGCCAAGGATATCAAGEST: gi|58673475|gb|CK062161.1|CK062161
genomic: GCAAGCCGGGAGCAGCGCTCGCCAGgtgagcggat ... tgatatgtagGTTGGAAGCAGGCTTGCCTTGAGCAGGAACTATGCTGCCAAGGATATCAAG
EST: GCAAGCCGGGAGCAGCGCTCGCCAG GTTGGAAGCAGGCTTGCCTTGAGCAGGAACTATGCTGCCAAGGATATCAAGEST: gi|58689551|gb|CK078238.1|CK078238
genomic: GCAAGCCGGGAGCAGCGCTCGCCAGgtgagcggat ... tgatatgtagGTTGGAAGCAGGCTTGCCTTGAGCAGGAACTATGCTGCCAAGGATATCAAG
EST: GCAAGCCGGGAGCAGCGCTCGCCAG GTTGGAAGCAGGCTTGCCTTGAGCAGGAACTATGCTGCCAAGGATATCAAGEST: gi|58685403|gb|CK074090.1|CK074090
genomic: GCAAGCCGGGAGCAGCGCTCGCCAGgtgagcggat ... tgatatgtagGTTGGAAGCAGGCTTGCCTTGAGCAGGAACTATGCTGCCAAGGATATCAAG
EST: GCAAGCCGGGAGCAGCGCTCGCCAG GTTGGAAGCAGGCTTGCCTTGAGCAGGAACTATGCTGCCAAGGATATCAAGEST: gi|58597481|gb|CK008009.1|CK008009
genomic: GCAAGCCGGGAGCAGCGCTCGCCAGgtgagcggat ... tgatatgtagGTTGGAAGCAGGCTTGCCTTGAGCAGGAACTATGCTGCCAAGGATATCAAG
EST: GCAAGCCGGGAGCAGCGCTCGCCAG GTTGGAAGCAGGCTTGCCTTGAGCAGGAACTATGCTGCCAAGGATATCGAGEST: gi|29632103|gb|CB637112.1|CB637112
genomic: GCAAGCCGGGAGCAGCGCTCGCCAGgtgagcggat ... tgatatgtagGTTGGAAGCAGGCTTGCCTTGAGCAGGAACTATGCTGCCAAGGATATCAAG
EST: GCAAGCCGGGAGCAGCGCTCGCCAG GTTGGAAGCAGGCTTGCCTTGAGCAGGAACTATGCTGCCAAGGATATCAAGEST: gi|58652508|gb|CK041188.1|CK041188
genomic: GCAAGCCGGGAGCAGCGCTCGCCAGgtgagcggat ... tgatatgtagGTTGGAAGCAGGCTTGCCTTGAGCAGGAACTATGCTGCCAAGGATATCAAG
EST: GCAAGCCGGGAGCAGCGCTCGCCAG GTTGGAAGCAGGCTTGCCTTGAGCAGGAACTATGCTGCCAAGGATATCAAGEST: gi|29627179|gb|CB632190.1|CB632190
genomic: GCAAGCCGGGAGCAGCGCTCGCCAGgtgagcggat ... tgatatgtagGTTGGAAGCAGGCTTGCCTTGAGCAGGAACTATGCTGCCAAGGATATCAAG
EST: GCAAGCCGGGAGCAGCGCTCGCCAG GTTGGAAGCAGGCTTGCCTTGAGCAGGAACTATGCTGCCAAGGATATCAAG
genomic: GCAAGCCGGGAGCAGCGCTCGCCAGgtgagcggat ... tgatatgtagGTTGGAAGCAGGCTTGCCTTGAGCAGGAACTATGCTGCCAAGGATATCAAG
gtaatcaaatgaactttcttttttgctttgtttccttatatatgatgatatgtagGTTGGAAGCAGGCTTGCCTTGAGCAGGAACTATGCTGCCAAGGATATCAAGTTTGGAGTTGAGGCCCGTGCTTTGATGCTGAGGGGTGTTGAGGAGTTGG
ttatatatgatgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cactggtctgtaatcgtcgtgagttgatggtggtcagagttggttgtaatcaaatgaactttcttttttgctttgtttccttatatatgatgatatgtagGTTGGAAGCAGGCTTGCCTTGAGCAGGAACTATGCTGCCAAGGATATCAAGTTTGGAGTTGAGGCCCGTGCTTTGATGCTGAGGGGTGTTGAGGAGTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - gttgatg
- - - - - - - - - - - - - - - - - - - - - - - -aatcaaa