1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...taagcctaattttgcatgtgaaattatattattttgttttcacatagaatctctaaattgtttcctatttctttgtactgaagttaaatttatttttcagTTAGTGCAAAGCAGCCGCAATGAGTACCTCAAACTGAAGGCACGGGTGGAAAATTTACAGAGGACCCAAAG
species | Oryza sativa |
transcript | LOC_Os09g32948.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AATTCAGTTATGGTGGGCCAGATACTGCAATACAGAACAAGGAAAATGAG TTAGTGCAAAGCAGCCGCAATGAGTACCTCAAACTGAAGGCACGGGTGGAAEST: gi|66947293|gb|AU312137.1|AU312137
genomic: AATTCAGTTATGGTGGGCCAGATACTGCAATACAGAACAAGGAAAATGAGgttactagat ... tatttttcagTTAGTGCAAAGCAGCCGCAATGAGTACCTCAAACTGAAGGCACGGGTGGAA
EST: AATTCAGTTATGGTGGGCCAGATACTGCAATACAGAACAAGGAAAATGAG TTAGTGCAAAGCAGCCGCAATGAGEST: gi|55408198|gb|CV720574.1|CV720574
genomic: AATTCAGTTATGGTGGGCCAGATACTGCAATACAGAACAAGGAAAATGAGgttactagat ... tatttttcagTTAGTGCAAAGCAGCCGCAATGAG
EST: AATTCAGTTATGGTGGGCCAGATACTGCAATACAGAACAAGGAAAATGAG TTAGTGCAAAGCAGCCGCAATGAGTACCTCAAACTGAAGGCACGGGTGGAA
genomic: AATTCAGTTATGGTGGGCCAGATACTGCAATACAGAACAAGGAAAATGAGgttactagat ... tatttttcagTTAGTGCAAAGCAGCCGCAATGAGTACCTCAAACTGAAGGCACGGGTGGAA
agaatctctaaattgtttcctatttctttgtactgaagttaaatttatttttcagTTAGTGCAAAGCAGCCGCAATGAGTACCTCAAACTGAAGGCACGGGTGGAAAATTTACAGAGGACCCAAAG
ctctaaa putative branch site (score: 163)
tttatttttc putative PPT
tactgaagttaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taagcctaattttgcatgtgaaattatattattttgttttcacatagaatctctaaattgtttcctatttctttgtactgaagttaaatttatttttcagTTAGTGCAAAGCAGCCGCAATGAGTACCTCAAACTGAAGGCACGGGTGGAAAATTTACAGAGGACCCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactgaa