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...gatgcaaaaattcaaatatgtggaagaagcgcagctgagatccctttttttaagttattttattgtaaaactactaacagttacatattaatatgtccagATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTGAGAGCAAAGCTCCATCACCTGGGCAGGCTTGTGTCACTTGAGATGGGGA
species | Oryza sativa |
transcript | LOC_Os09g26880.4 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCG ATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTGEST: gi|88730430|gb|CI754043.1|CI754043
genomic: ACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCGgtgagtttca ... atatgtccagATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTG
EST: ACGAGGAGGGCATGCGCGCCTGCTANGATGCCGCCAAGACCTGGATGGCG ATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTG
genomic: ACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCGgtgagtttca ... atatgtccagATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTG
ttttttaagttattttattgtaaaactactaacagttacatattaatatgtccagATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTGAGAGCAAAGCTCCATCACCTGGGCAGGCTTGTGTCACTTGAGATGGGGA
taagttattttattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgcaaaaattcaaatatgtggaagaagcgcagctgagatccctttttttaagttattttattgtaaaactactaacagttacatattaatatgtccagATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTGAGAGCAAAGCTCCATCACCTGGGCAGGCTTGTGTCACTTGAGATGGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG