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...gatgcaaaaattcaaatatgtggaagaagcgcagctgagatccctttttttaagttattttattgtaaaactactaacagttacatattaatatgtccagATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTGAGAGCAAAGCTCCATCACCTGGGCAGGCTTGTGTCACTTGAGATGGGGA
species | Oryza sativa |
transcript | LOC_Os09g26880.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCG ATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTGEST: gi|29617477|gb|CB622489.1|CB622489
genomic: ACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCGgtgagtttca ... atatgtccagATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTG
EST: ACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCG ATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTGEST: gi|29656047|gb|CB652322.1|CB652322
genomic: ACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCGgtgagtttca ... atatgtccagATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTG
EST: ACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCG ATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTGEST: gi|29656045|gb|CB652320.1|CB652320
genomic: ACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCGgtgagtttca ... atatgtccagATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTG
EST: ACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCG ATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTGEST: gi|88730430|gb|CI754043.1|CI754043
genomic: ACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCGgtgagtttca ... atatgtccagATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTG
EST: ACGAGGAGGGCATGCGCGCCTGCTANGATGCCGCCAAGACCTGGATGGCG ATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTGEST: gi|29638871|gb|CB643880.1|CB643880
genomic: ACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCGgtgagtttca ... atatgtccagATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTG
EST: ACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCG ATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTGEST: gi|33683878|gb|CF312117.1|CF312117
genomic: ACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCGgtgagtttca ... atatgtccagATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTG
EST: ACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCG ATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTGEST: gi|29665768|gb|CB662043.1|CB662043
genomic: ACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCGgtgagtttca ... atatgtccagATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTG
EST: ACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCG ATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTGEST: gi|33681819|gb|CF310058.1|CF310058
genomic: ACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCGgtgagtttca ... atatgtccagATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTG
EST: ACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCG ATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTGEST: gi|29655872|gb|CB652147.1|CB652147
genomic: ACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCGgtgagtttca ... atatgtccagATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTG
EST: ACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCG ATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTGEST: gi|29661446|gb|CB657721.1|CB657721
genomic: ACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCGgtgagtttca ... atatgtccagATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTG
EST: ACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCG ATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTGEST: gi|59930146|gb|AB178688.1|AB178688
genomic: ACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCGgtgagtttca ... atatgtccagATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTG
EST: ACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCG ATTCCAGCTCCAAAGCGAGGGGAAATTGTTAGGCAAATTGGTGATGCATTGEST: gi|58689444|gb|CK078131.1|CK078131
genomic: ACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCGgtgagtttca ... atatgtccagATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTG
EST: ACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCG ATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTGEST: gi|29673252|gb|CB669527.1|CB669527
genomic: ACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCGgtgagtttca ... atatgtccagATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTG
EST: ACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCG ATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTGEST: gi|29628521|gb|CB633532.1|CB633532
genomic: ACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCGgtgagtttca ... atatgtccagATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTG
EST: ACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCG ATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTGEST: gi|29677488|gb|CB673763.1|CB673763
genomic: ACGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCGgtgagtttca ... atatgtccagATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTG
EST: CGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCG ATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTG
genomic: CGAGGAGGGCATGCGCGCCTGCTACGATGCCGCCAAGACCTGGATGGCGgtgagtttca ... atatgtccagATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTG
ttttttaagttattttattgtaaaactactaacagttacatattaatatgtccagATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTGAGAGCAAAGCTCCATCACCTGGGCAGGCTTGTGTCACTTGAGATGGGGA
taagttattttattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgcaaaaattcaaatatgtggaagaagcgcagctgagatccctttttttaagttattttattgtaaaactactaacagttacatattaatatgtccagATTCCAGCTCCAAAGCGAGGAGAAATTGTTAGGCAAATTGGTGATGCATTGAGAGCAAAGCTCCATCACCTGGGCAGGCTTGTGTCACTTGAGATGGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
gatgcaa
- - - - - - - - - - - - - - - gcagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actaaca