1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ggaagagcttcatgccaatctcatgaaagttataagatatgctcacttgctgaggtgcacgtggatggtactgaatccagatacttgggtgtactttcagGGGCATGAAGACAGATATACCATATATGTACATGCATCAAGAGAAAGGCCTGTTCACGCTAGTCCGATATTTAATGGCAGAGATATTCGAAGTGAAAAG
species | Oryza sativa |
transcript | LOC_Os06g48700.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGACACCCAGTTCATTGCCATTCGAGAAGCTTTGGGAAAAGTTCTTCATG GGGCATGAAGACAGATATACCATATATGTACATGCATCAAGAGAAAGGCCTEST: gi|88577823|gb|CI674433.1|CI674433
genomic: TGACACCCAGTTCATTGCCATTCGAGAAGCTTTGGGAAAAGTTCTTCATGgtatgatatt ... gtactttcagGGGCATGAAGACAGATATACCATATATGTACATGCATCAAGAGAAAGGCCT
EST: TGACACCCAGTTCATTGCCATTCGAGAAGCTTTGGGAAAAGTTCTTCATG GGGCATGAAGACAGATATACCATATATGTACATGCATCAAGAGAAAGGCCTEST: gi|58652630|gb|CK041310.1|CK041310
genomic: TGACACCCAGTTCATTGCCATTCGAGAAGCTTTGGGAAAAGTTCTTCATGgtatgatatt ... gtactttcagGGGCATGAAGACAGATATACCATATATGTACATGCATCAAGAGAAAGGCCT
EST: TGACACCCAGTTCATTGCCATTCGAGAAGCTTTGGGAAAAGTTCTTCATG GGGCATGAAGACAGATATACCATATATGTACATGCATCAAGAGAAAGGCCTEST: gi|58665804|gb|CK054490.1|CK054490
genomic: TGACACCCAGTTCATTGCCATTCGAGAAGCTTTGGGAAAAGTTCTTCATGgtatgatatt ... gtactttcagGGGCATGAAGACAGATATACCATATATGTACATGCATCAAGAGAAAGGCCT
EST: TGACACCCAGTTCATTGCCATTCGAGAAGCTTTGGGAAAAGTTCTTCATG GGGCATGAAGACAGATATACCATATATGTACATGCATCAAG
genomic: TGACACCCAGTTCATTGCCATTCGAGAAGCTTTGGGAAAAGTTCTTCATGgtatgatatt ... gtactttcagGGGCATGAAGACAGATATACCATATATGTACATGCATCAAG
cttgctgaggtgcacgtggatggtactgaatccagatacttgggtgtactttcagGGGCATGAAGACAGATATACCATATATGTACATGCATCAAGAGAAAGGCCTGTTCACGCTAGTCCGATATTTAATGGCAGAGATATTCGAAGTGAAAAG
tactttc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaagagcttcatgccaatctcatgaaagttataagatatgctcacttgctgaggtgcacgtggatggtactgaatccagatacttgggtgtactttcagGGGCATGAAGACAGATATACCATATATGTACATGCATCAAGAGAAAGGCCTGTTCACGCTAGTCCGATATTTAATGGCAGAGATATTCGAAGTGAAAAG
- - - - ttcatgc
- - - - - - - - - - -catgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atacttg