1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgtgtacgtatacttgaattctcgttggcagattttttcatgtttctgcatccaatatatctaatgctactgaaacacaattaccagATCAGCAGCATTTGTGATAGCCTTCTTGATGAAGACCAAAGGCTGGAGACTTTCCCAGTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTGCAATTG
species | Oryza sativa |
transcript | LOC_Os06g20340.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAAAGAGATAAAGCACGTGTTCTAGTCCATTGCATGTCAGGGAAAAGTAG ATCAGCAGCATTTGTGATAGCCTTCTTGATGAAGACCAAAGGCTGGAGACTEST: gi|33675778|gb|CF304017.1|CF304017
genomic: GAAAGAGATAAAGCACGTGTTCTAGTCCATTGCATGTCAGGGAAAAGTAGgtgtgtacgt ... caattaccagATCAGCAGCATTTGTGATAGCCTTCTTGATGAAGACCAAAGGCTGGAGACT
EST: GAAAGAGATAAAGCACGTGTTCTAGTCCATTGCATGTCAGGGAAAAGTAG ATCAGCAGCATTTGTGATAGCCTTCTTGATGAAGACCAAAGGCTGGAGACTEST: gi|29675978|gb|CB672253.1|CB672253
genomic: GAAAGAGATAAAGCACGTGTTCTAGTCCATTGCATGTCAGGGAAAAGTAGgtgtgtacgt ... caattaccagATCAGCAGCATTTGTGATAGCCTTCTTGATGAAGACCAAAGGCTGGAGACT
EST: AGTCCATTGCATGTCAGGGAAAAGTAG ATCAGCAGCATTTGTGATAGCCTTCTTGATGAAGACCAAAGGCTGGAGACT
genomic: AGTCCATTGCATGTCAGGGAAAAGTAGgtgtgtacgt ... caattaccagATCAGCAGCATTTGTGATAGCCTTCTTGATGAAGACCAAAGGCTGGAGACT
ttttttcatgtttctgcatccaatatatctaatgctactgaaacacaattaccagATCAGCAGCATTTGTGATAGCCTTCTTGATGAAGACCAAAGGCTGGAGACTTTCCCAGTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTGCAATTG
atctaat putative branch site (score: 3)
aatatatctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtacgtatacttgaattctcgttggcagattttttcatgtttctgcatccaatatatctaatgctactgaaacacaattaccagATCAGCAGCATTTGTGATAGCCTTCTTGATGAAGACCAAAGGCTGGAGACTTTCCCAGTGTTTCCAATGGGTGAAAGAAAGAAGACCACAAGTGCAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG