1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttactgcttcattatttcgttcaattcaacgtatattttcagatagctaactactccataaacttgtgtaaacacgttactttctgttgcagGCAACAGTACGGGTTTCGGAGAGTGGAATTATGACATCAGATCTGCTTGACATGTTATTTACAGGACAAGTTGGGCAGGATGTGAAAACAAAA
species | Oryza sativa |
transcript | LOC_Os04g43420.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGTTCTCCAGCTTCTCATCTGGCACCGAACGAGCTGTGAAGACATGGCAG GCAACAGTACGGGTTTCGGAGAGTGGAATTATGACATCAGATCTGCTTGACEST: gi|4716796|gb|AU057912.1|AU057912
genomic: AGTTCTCCAGCTTCTCATCTGGCACCGAACGAGCTGTGAAGACATGGCAGgttactgctt ... tctgttgcagGCAACAGTACGGGTTTCGGAGAGTGGAATTATGACATCAGATCTGCTTGAC
EST: AGTTCTCCAGCTTCTCATCNGGCACCGAACGAGCTGTGAAGACATGGCAG GCAACAGTACGGGTTTCGGAGAGTGGAATTATGACATCAGATCTGCTTGAC
genomic: AGTTCTCCAGCTTCTCATCTGGCACCGAACGAGCTGTGAAGACATGGCAGgttactgctt ... tctgttgcagGCAACAGTACGGGTTTCGGAGAGTGGAATTATGACATCAGATCTGCTTGAC
ttcagatagctaactactccataaacttgtgtaaacacgttactttctgttgcagGCAACAGTACGGGTTTCGGAGAGTGGAATTATGACATCAGATCTGCTTGACATGTTATTTACAGGACAAGTTGGGCAGGATGTGAAAACAAAA
agctaac putative branch site (score: 21)
ttactttct putative PPT
ataaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttactgcttcattatttcgttcaattcaacgtatattttcagatagctaactactccataaacttgtgtaaacacgttactttctgttgcagGCAACAGTACGGGTTTCGGAGAGTGGAATTATGACATCAGATCTGCTTGACATGTTATTTACAGGACAAGTTGGGCAGGATGTGAAAACAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG