1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ctcttagtatttaagactatctgaaaacacttccaaaataaagtatattgtgtacggttgcagcaagtacttgcaatgactagtctttcatattattcagGTTGATCCTGATGAGGTCAATGCGTTGGCACAACTAATGACATGGAAGACGGCCGTGGCTAATATTCCATATGGAGGAGCTAAAGGTGGAATAGGATGCA
species | Oryza sativa |
transcript | LOC_Os03g58040.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACGACAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG GTTGATCCTGATGAGGTCAATGCGTTGGCACAACTAATGACATGGAAGACGEST: gi|58686901|gb|CK075588.1|CK075588
genomic: ACGACAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtgagaattt ... tattattcagGTTGATCCTGATGAGGTCAATGCGTTGGCACAACTAATGACATGGAAGACG
EST: ACGACAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG GTTGATCCTGATGAGGTCAATGCGTTGGCACAACTAATGACATGGAAGACGEST: gi|88400786|gb|CI616791.1|CI616791
genomic: ACGACAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtgagaattt ... tattattcagGTTGATCCTGATGAGGTCAATGCGTTGGCACAACTAATGACATGGAAGACG
EST: ACGACAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG GTTGATCCTGATGAGGTCAATGCGTTGGCACAACTAATGACATGGAAGACGEST: gi|88364648|gb|CI612463.1|CI612463
genomic: ACGACAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtgagaattt ... tattattcagGTTGATCCTGATGAGGTCAATGCGTTGGCACAACTAATGACATGGAAGACG
EST: ACGACAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG GTTGATCCTGATGAGGTCAATGCGTTGGCACAACTAATGACATGGAAGACGEST: gi|88428743|gb|CI599459.1|CI599459
genomic: ACGACAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtgagaattt ... tattattcagGTTGATCCTGATGAGGTCAATGCGTTGGCACAACTAATGACATGGAAGACG
EST: ACGACAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG GTTGATCCTGATGAGGTCAATGCGTTGGCACAACTAATGACATGGAAGACGEST: gi|88355078|gb|CI615347.1|CI615347
genomic: ACGACAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtgagaattt ... tattattcagGTTGATCCTGATGAGGTCAATGCGTTGGCACAACTAATGACATGGAAGACG
EST: ACGACAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG GTTGATCCTGATGAGGTCAATGCGTTGGCACAACTAATGACATGGAAGACGEST: gi|29673988|gb|CB670263.1|CB670263
genomic: ACGACAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtgagaattt ... tattattcagGTTGATCCTGATGAGGTCAATGCGTTGGCACAACTAATGACATGGAAGACG
EST: ACGACAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG GTTGATCCTGATGAGGTCAATGCGTTGGCACAACTAATGACATGGAAGACGEST: gi|88405772|gb|CI609671.1|CI609671
genomic: ACGACAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtgagaattt ... tattattcagGTTGATCCTGATGAGGTCAATGCGTTGGCACAACTAATGACATGGAAGACG
EST: ACGACAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG GTTGATCCTGATGAGGTCAATGCGTTGGCACAAATAATGACATGGAAGACGEST: gi|88428464|gb|CI564932.1|CI564932
genomic: ACGACAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtgagaattt ... tattattcagGTTGATCCTGATGAGGTCAATGCGTTGGCACAACTAATGACATGGAAGACG
EST: ACGACAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG GTTGATCCTGATGAGGTCAATGCGTTGGCACAACTAATGACATGGAAGACGEST: gi|29679310|gb|CB675585.1|CB675585
genomic: ACGACAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtgagaattt ... tattattcagGTTGATCCTGATGAGGTCAATGCGTTGGCACAACTAATGACATGGAAGACG
EST: ACGACAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG GTTGATCCTGATGAGGTCAATGCGTTGGCACAACTAATGACATGGAAGACGEST: gi|33675066|gb|CF303305.1|CF303305
genomic: ACGACAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtgagaattt ... tattattcagGTTGATCCTGATGAGGTCAATGCGTTGGCACAACTAATGACATGGAAGACG
EST: ACGACAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG GTTGATCCTGATGAGGTCAATGCGTTGGCACAACTAATGACATGGAAGACGEST: gi|86904378|gb|CI308588.1|CI308588
genomic: ACGACAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtgagaattt ... tattattcagGTTGATCCTGATGAGGTCAATGCGTTGGCACAACTAATGACATGGAAGACG
EST: ACGACAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAG GTTGATCCTGATGAGGTCAATGCGTTGGCACAACTAATGACATGGAAGACG
genomic: ACGACAATGCTAGGGGACCTATGAAGGGTGGAATCAGATACCACCATGAGgtgagaattt ... tattattcagGTTGATCCTGATGAGGTCAATGCGTTGGCACAACTAATGACATGGAAGACG
tattgtgtacggttgcagcaagtacttgcaatgactagtctttcatattattcagGTTGATCCTGATGAGGTCAATGCGTTGGCACAACTAATGACATGGAAGACGGCCGTGGCTAATATTCCATATGGAGGAGCTAAAGGTGGAATAGGATGCA
tctttcat CT-rich tract
tctttcatattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcttagtatttaagactatctgaaaacacttccaaaataaagtatattgtgtacggttgcagcaagtacttgcaatgactagtctttcatattattcagGTTGATCCTGATGAGGTCAATGCGTTGGCACAACTAATGACATGGAAGACGGCCGTGGCTAATATTCCATATGGAGGAGCTAAAGGTGGAATAGGATGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG