1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...acacatgccatccaaaccaaaaccatgtttgtggagggctattcttggtgcatttgttccgttttaacttctaatctgtttacttgtttcatgtttgcagATCCGTGATTACCATAGGCGTAATCCTTCTGCCCGTTTCGTTAGTGCAACTGATGATTTCGAAGAGCTACTAAAGGAGGAACCGGCTATTGAATTCACTG
species | Oryza sativa |
transcript | LOC_Os03g50850.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCACAGTGCAAGCTGAAATCTTTCCAAAGTTCTATGACAGGCTCAAAGAG ATCCGTGATTACCATAGGCGTAATCCTTCEST: gi|29664558|gb|CB660833.1|CB660833
genomic: CCACAGTGCAAGCTGAAATCTTTCCAAAGTTCTATGACAGGCTCAAAGAGgtaatgatct ... atgtttgcagATCCGTGATTACCATAGGCGTAATCCTTC
EST: CCACAGTGCAAGCTGAAATCTTTCCAAAGTTCTATGACAGGCTCAAAGAG ATCCGTGATTACCATAGGCGTAATCCTTCTGCCCGTTTCGTTAGTGCAACTEST: gi|88393433|gb|CI618321.1|CI618321
genomic: CCACAGTGCAAGCTGAAATCTTTCCAAAGTTCTATGACAGGCTCAAAGAGgtaatgatct ... atgtttgcagATCCGTGATTACCATAGGCGTAATCCTTCTGCCCGTTTCGTTAGTGCAACT
EST: CCACAGTGCAAGCTGAAATCTTTCCAAAGTTCTATGACAGGCTCAAAGAG ATC-GTGATTAGCATAGGGGTAATCCTTCTGEST: gi|29664554|gb|CB660829.1|CB660829
genomic: CCACAGTGCAAGCTGAAATCTTTCCAAAGTTCTATGACAGGCTCAAAGAGgtaatgatct ... atgtttgcagATCCGTGATTACCATAGGCGTAATCCTTCTG
EST: CCACAGTGCAAGCTGAAATCTTTCCAAAGTTCTATGACAGGCTCAAAGAG ATCCGTGATTACCATAGGCGTAATCCTTCTGCCCGTTTCGTTAGTGCAACTEST: gi|58659954|gb|CK048634.1|CK048634
genomic: CCACAGTGCAAGCTGAAATCTTTCCAAAGTTCTATGACAGGCTCAAAGAGgtaatgatct ... atgtttgcagATCCGTGATTACCATAGGCGTAATCCTTCTGCCCGTTTCGTTAGTGCAACT
EST: CCACAGTGCAAGCTGAAATCTTTCCAAAGTTCTATGACAGGCTCAAAGAG ATCCGTGATTACCATAGGCGTAATCCTTCTGCCCGTTTCGTTAGTGCAACTEST: gi|88399904|gb|CI585823.1|CI585823
genomic: CCACAGTGCAAGCTGAAATCTTTCCAAAGTTCTATGACAGGCTCAAAGAGgtaatgatct ... atgtttgcagATCCGTGATTACCATAGGCGTAATCCTTCTGCCCGTTTCGTTAGTGCAACT
EST: CCACAGTGCAAGCTGAAATCTTTCCAAAGTTCTATGACAGGCTCAAAGAG ATCCGTGATTACCATAGGCGTAATCCT
genomic: CCACAGTGCAAGCTGAAATCTTTCCAAAGTTCTATGACAGGCTCAAAGAGgtaatgatct ... atgtttgcagATCCGTGATTACCATAGGCGTAATCCT
tggtgcatttgttccgttttaacttctaatctgtttacttgtttcatgtttgcagATCCGTGATTACCATAGGCGTAATCCTTCTGCCCGTTTCGTTAGTGCAACTGATGATTTCGAAGAGCTACTAAAGGAGGAACCGGCTATTGAATTCACTG
ttctaat putative branch site (score: 2)
ttttaacttctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acacatgccatccaaaccaaaaccatgtttgtggagggctattcttggtgcatttgttccgttttaacttctaatctgtttacttgtttcatgtttgcagATCCGTGATTACCATAGGCGTAATCCTTCTGCCCGTTTCGTTAGTGCAACTGATGATTTCGAAGAGCTACTAAAGGAGGAACCGGCTATTGAATTCACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- -catgcca
- - - - - - -aaaccaa
- - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - -tggtgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtttc