1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaatcacgatcaatcccctctcagatctatcgccttccccccgctgcttcggtttttttctgatccatttcgtgcttttgatatacctatcgaagGCGAGAGGCTGGGCAGAAGGATCGCCACAGACGCGATCACCACGCCAGTAGTGAACACCTCGGCCTACTGGTTCAACAACTCGCAGGAGCTCATTGACTT
species | Oryza sativa |
transcript | LOC_Os03g25940.4 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCCGAGCAGGCCCTGCTCGGTTCAGACGCCAGCCTCGCCGTCCACGCGG GCGAGAGGCTGGGCAGAAGGATCGCCACAGACGCGATCACCACGCCAGTAGEST: gi|29645224|gb|CB650231.1|CB650231
genomic: GGCCGAGCAGGCCCTGCTCGGTTCAGACGCCAGCCTCGCCGTCCACGCGGgtaatcacga ... cctatcgaagGCGAGAGGCTGGGCAGAAGGATCGCCACAGACGCGATCACCACGCCAGTAG
EST: GGCCGAGCAGGCCCTGCTCGGTTCAGACGCCAGCCTCGCCGTCCACGCGG GCGAGAGGCTGGGCAGAAGGATCGCCACAGACGCGATCACCACGCCAGTAGEST: gi|55411461|gb|CV723837.1|CV723837
genomic: GGCCGAGCAGGCCCTGCTCGGTTCAGACGCCAGCCTCGCCGTCCACGCGGgtaatcacga ... cctatcgaagGCGAGAGGCTGGGCAGAAGGATCGCCACAGACGCGATCACCACGCCAGTAG
EST: GGCCGAGCAGGCCCTGCTCGGTTCAGACGCCAGCCTCGCCGTCCACGCGG GCGAGAGGCTGGGCAGAAGGATCGCCACAGACGCGATCACCACGCCAGTAGEST: gi|29660676|gb|CB656951.1|CB656951
genomic: GGCCGAGCAGGCCCTGCTCGGTTCAGACGCCAGCCTCGCCGTCCACGCGGgtaatcacga ... cctatcgaagGCGAGAGGCTGGGCAGAAGGATCGCCACAGACGCGATCACCACGCCAGTAG
EST: GGTTCAGACGCCAGCCTCGCCGTCCACGCGG GCGAGAGGCTGGGCAGAAGGATCGCCACAGACGCGATCACCACGCCAGTAG
genomic: GGTTCAGACGCCAGCCTCGCCGTCCACGCGGgtaatcacga ... cctatcgaagGCGAGAGGCTGGGCAGAAGGATCGCCACAGACGCGATCACCACGCCAGTAG
ccgctgcttcggtttttttctgatccatttcgtgcttttgatatacctatcgaagGCGAGAGGCTGGGCAGAAGGATCGCCACAGACGCGATCACCACGCCAGTAGTGAACACCTCGGCCTACTGGTTCAACAACTCGCAGGAGCTCATTGACTT
ttttgatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcacgatcaatcccctctcagatctatcgccttccccccgctgcttcggtttttttctgatccatttcgtgcttttgatatacctatcgaagGCGAGAGGCTGGGCAGAAGGATCGCCACAGACGCGATCACCACGCCAGTAGTGAACACCTCGGCCTACTGGTTCAACAACTCGCAGGAGCTCATTGACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA