1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgggggggggggttgattttgtgacgaaccatttgtagctctgcatcgtctggttgggggagggttgggtggggatgcgagggagctgatgatgctgtggttgttgtgtgtttcgtagGGATGATTTGGTGGTGCCGAGGTCGCCCTACTTCCCTGTGGAGTATGCGTCGGGGCAGGAACGCGGGCCATCGCCCATGGTGATGGAGCGGTTCCAGAGC
species | Oryza sativa |
transcript | LOC_Os03g19510.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCCGCTGGCCACGGGGCCGCTCATCAGAGGAGCGGGATTTGGTCGATCAG GGATGATTTGGTGGTGCCGAGGTCGCCCTACTTCCCTGTGGAGTATGCGTCEST: gi|33682024|gb|CF310263.1|CF310263
genomic: GCCGCTGGCCACGGGGCCGCTCATCAGAGGAGCGGGATTTGGTCGATCAGgtgggggggg ... tgtttcgtagGGATGATTTGGTGGTGCCGAGGTCGCCCTACTTCCCTGTGGAGTATGCGTC
EST: GCCGCTGGCCACGGGGCCGCTCATCAGAGGAGCGGGATTTGGTCGATCAG GGATGATTTGGTGGTGCCGAGGTCGCCCTACTTCCCTGTGGAGTATGCGTCEST: gi|33801418|gb|CF326580.1|CF326580
genomic: GCCGCTGGCCACGGGGCCGCTCATCAGAGGAGCGGGATTTGGTCGATCAGgtgggggggg ... tgtttcgtagGGATGATTTGGTGGTGCCGAGGTCGCCCTACTTCCCTGTGGAGTATGCGTC
EST: GCCGCTGGCCACGGGGCCGCTCATCAGAGGAGCGGGATTTGGTCGATCAG GGATGATTTGGTGGTGCCGAGGTCGCCCTACTTCCCTGTGGAGTATGCGTCEST: gi|88592912|gb|CI711051.1|CI711051
genomic: GCCGCTGGCCACGGGGCCGCTCATCAGAGGAGCGGGATTTGGTCGATCAGgtgggggggg ... tgtttcgtagGGATGATTTGGTGGTGCCGAGGTCGCCCTACTTCCCTGTGGAGTATGCGTC
EST: GCCGCTGGCCACGGGGCCGCTCATCAGAGGAGCGGGATTTGGTCGATCAG GGATGATTTGGTGGTGCCGAGGTCGCCCTACTTCCCTGTGGAGTATGCGTCEST: gi|88310592|gb|CI672451.1|CI672451
genomic: GCCGCTGGCCACGGGGCCGCTCATCAGAGGAGCGGGATTTGGTCGATCAGgtgggggggg ... tgtttcgtagGGATGATTTGGTGGTGCCGAGGTCGCCCTACTTCCCTGTGGAGTATGCGTC
EST: GCCGCTGGCCACGGGGCCGCTCATCAGAGGAGCGGGATTTGGTCGATCAG GGATGATTTGGTGGTGCCGAGGTCGCCCTACTTCCCTGTGGAGTATGCGTC
genomic: GCCGCTGGCCACGGGGCCGCTCATCAGAGGAGCGGGATTTGGTCGATCAGgtgggggggg ... tgtttcgtagGGATGATTTGGTGGTGCCGAGGTCGCCCTACTTCCCTGTGGAGTATGCGTC
gttgggtggggatgcgagggagctgatgatgctgtggttgttgtgtgtttcgtagGGATGATTTGGTGGTGCCGAGGTCGCCCTACTTCCCTGTGGAGTATGCGTCGGGGCAGGAACGCGGGCCATCGCCCATGGTGATGGAGCGGTTCCAGAGC
agctgat putative branch site (score: 26)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggggggggggttgattttgtgacgaaccatttgtagctctgcatcgtctggttgggggagggttgggtggggatgcgagggagctgatgatgctgtggttgttgtgtgtttcgtagGGATGATTTGGTGGTGCCGAGGTCGCCCTACTTCCCTGTGGAGTATGCGTCGGGGCAGGAACGCGGGCCATCGCCCATGGTGATGGAGCGGTTCCAGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA