1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aaaatgtgtctacattcctgttgcattcatgcttgaccagaaagtgtattagtttattgtggttgcatcttggaatgtgactgttttcttctttctccagTCATATCTCTATCAGATACTCCGCGGCGTTGCTTACTGTCATTCTCATAGAGTTCTTCATCGAGATTTGAAACCTCAGAATTTATTGATAGATCGGCGTA
species | Oryza sativa |
transcript | LOC_Os03g02680.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGTTCATGGACTCTTGTCCAGAGTTTGCGAAAAACCCCACTTTAATTAAG TCATATCTCTATCAGATACTCCGCGGCGTTGCTTACTGTCATTCTCATAGAEST: gi|58682943|gb|CK071630.1|CK071630
genomic: AGTTCATGGACTCTTGTCCAGAGTTTGCGAAAAACCCCACTTTAATTAAGgtgagtggcc ... ctttctccagTCATATCTCTATCAGATACTCCGCGGCGTTGCTTACTGTCATTCTCATAGA
EST: AGTTCATGGACTCTTGTCCAGAGTTTGCGAAAAACCCCACTTTAATTAAG TCATATCTCTATCAGATACTCCGCGGCGTTGCTTACTGTCATTCTCATAGAEST: gi|88254231|gb|CI352857.1|CI352857
genomic: AGTTCATGGACTCTTGTCCAGAGTTTGCGAAAAACCCCACTTTAATTAAGgtgagtggcc ... ctttctccagTCATATCTCTATCAGATACTCCGCGGCGTTGCTTACTGTCATTCTCATAGA
EST: AGTTCATGGACTCTTGTCCAGAGTTTGCGAAAAACCCCACTTTAATTAAG TCATATCTCTATCAGATACTCCGCGGCGTTGCTTACTGTCATTCTCATAGAEST: gi|218491447|gb|FG947046.1|FG947046
genomic: AGTTCATGGACTCTTGTCCAGAGTTTGCGAAAAACCCCACTTTAATTAAGgtgagtggcc ... ctttctccagTCATATCTCTATCAGATACTCCGCGGCGTTGCTTACTGTCATTCTCATAGA
EST: AGTTCATGGACTCTTGTCCAGAGTTTGCGAAAAACCCCACTTTAATTAAG TCATATCTCTATCAGATACTCCGCGGCGTTGCTTACTGTCATTCTCATAGAEST: gi|58600107|gb|CK010635.1|CK010635
genomic: AGTTCATGGACTCTTGTCCAGAGTTTGCGAAAAACCCCACTTTAATTAAGgtgagtggcc ... ctttctccagTCATATCTCTATCAGATACTCCGCGGCGTTGCTTACTGTCATTCTCATAGA
EST: AGTTCATGGACTCTTGTCCAGAGTTTGCGAAAAACCCCACTTTAATTAAG TCATATCTCTATCAGATACTCCGCGGCGTTGCTTACTGTCATTCTCATAGAEST: gi|163918232|gb|EG715284.1|EG715284
genomic: AGTTCATGGACTCTTGTCCAGAGTTTGCGAAAAACCCCACTTTAATTAAGgtgagtggcc ... ctttctccagTCATATCTCTATCAGATACTCCGCGGCGTTGCTTACTGTCATTCTCATAGA
EST: AGTTCATGGACTCTTGTCCAGAGTTTGCGAAAAACCCCACTTTAATTAAG TCATATCTCTATCAGATACTCCGCGGCGTTGCTTACTGTCATTCTCATAGAEST: gi|428547|gb|D24699.1|D24699
genomic: AGTTCATGGACTCTTGTCCAGAGTTTGCGAAAAACCCCACTTTAATTAAGgtgagtggcc ... ctttctccagTCATATCTCTATCAGATACTCCGCGGCGTTGCTTACTGTCATTCTCATAGA
EST: GTTCATGGACTCTTGTCCAGAGTTTTGCGAAAAACCCCACTTTAATTAAG TCATATCTCTATCAGATACTCCGCGGCGTTGCTTACTGTCATTCTCATAGA
genomic: GTTCATGGACTCTTGTCCAGAGTTT-GCGAAAAACCCCACTTTAATTAAGgtgagtggcc ... ctttctccagTCATATCTCTATCAGATACTCCGCGGCGTTGCTTACTGTCATTCTCATAGA
gtattagtttattgtggttgcatcttggaatgtgactgttttcttctttctccagTCATATCTCTATCAGATACTCCGCGGCGTTGCTTACTGTCATTCTCATAGAGTTCTTCATCGAGATTTGAAACCTCAGAATTTATTGATAGATCGGCGTA
tgactgttttcttctt CT-rich tract
agtttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaatgtgtctacattcctgttgcattcatgcttgaccagaaagtgtattagtttattgtggttgcatcttggaatgtgactgttttcttctttctccagTCATATCTCTATCAGATACTCCGCGGCGTTGCTTACTGTCATTCTCATAGAGTTCTTCATCGAGATTTGAAACCTCAGAATTTATTGATAGATCGGCGTA
- - - - - - - - -ctgttgc
- - - - - - - - - - - - -ttcatgc
- - - - - - - - - - - - - - - - - -accagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatgtg