1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgccattgtcttttttgagttctttgcacgtaaggaatatctatagggtttatgatattgcatccagctaatgacaaatggctcaacatgcttatttcagATCAGAGAGTGCTGTAAGTAGTGAAGATGTTAGCCGGTTTGATTCTTCTGTGGCTGAAAGTGTTGGAGTACTAGGTAGTGACGAACCTCAACAAGGGGCT
species | Oryza sativa |
transcript | LOC_Os02g57750.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCGAGGGAGCTCGGGCAGTTGAGGCAGAGCCATCGTGTGTCCACTTTGAG ATCAGAGAGTGCTGTAAGTAGTGAAGATGTTAGCCGGTTTGATTCTTCTGTEST: gi|29669596|gb|CB665871.1|CB665871
genomic: GCGAGGGAGCTCGGGCAGTTGAGGCAGAGCCATCGTGTGTCCACTTTGAGgttagcaggc ... cttatttcagATCAGAGAGTGCTGTAAGTAGTGAAGATGTTAGCCGGTTTGATTCTTCTGT
EST: GCGAGGGAGCTCGGGCAGTTGAGGCAGAGCCATCGTGTGTCCACTTTGAG ATCAGAGAGTGCTGTAAGTAGTGAAGATGTTAGCCGGTTTGATTCTTCTGT
genomic: GCGAGGGAGCTCGGGCAGTTGAGGCAGAGCCATCGTGTGTCCACTTTGAGgttagcaggc ... cttatttcagATCAGAGAGTGCTGTAAGTAGTGAAGATGTTAGCCGGTTTGATTCTTCTGT
gggtttatgatattgcatccagctaatgacaaatggctcaacatgcttatttcagATCAGAGAGTGCTGTAAGTAGTGAAGATGTTAGCCGGTTTGATTCTTCTGTGGCTGAAAGTGTTGGAGTACTAGGTAGTGACGAACCTCAACAAGGGGCT
agctaat putative branch site (score: 3)
cttatttc putative PPT
tatgatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgccattgtcttttttgagttctttgcacgtaaggaatatctatagggtttatgatattgcatccagctaatgacaaatggctcaacatgcttatttcagATCAGAGAGTGCTGTAAGTAGTGAAGATGTTAGCCGGTTTGATTCTTCTGTGGCTGAAAGTGTTGGAGTACTAGGTAGTGACGAACCTCAACAAGGGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG