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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgccccatgctcacaattacctgacctttttatttttcttaccaagtgaattgatttatcagttattcttgccttgttggaattcagGTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATATTCTCGGCCCCTAATTACTGTGGAGAATTTGATAATGCTGGTGCCATGA

Basic information

species Oryza sativa
transcript LOC_Os02g57450.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g57450.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G390076_T03 (Zea mays), 3'ss of exon 2
gtgccccatgctcacaattacc-tgacctttttatttttcttaccaagtgaattgatttatcagttat--tcttgccttgttggaattcagGTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATATTCTCGGCCCCTAATTACTGTGGAGAATTTGATAATGCTGGTGCCATGA
||   |  |||||  ||  |   ||||||  |||||   ||||  ||||| ||  |    | | | ||  | ||||| ||||  ||||||||||||||||||||| || ||||| || |||| ||||||||| |||||||| || || |||||||| |||||||||||||||||||| |||||||||||||
gt-tgctgtgctctgaaagagtgtgacctacttattcc-cttataaagtgtatcaaccgtttactcatgtttttgccctgtta-aattcagGTTGTCGAAGATGGATATGAGTTTTTCGCTAGCCGCCAACTCGTAACAATGTTTTCAGCCCCTAACTACTGTGGAGAATTTGATAACGCTGGTGCCATGA

upper sequence: LOC_Os02g57450.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G112240_T01 (Zea mays), 3'ss of exon 2
gtgccccatgctcacaattacctgacctttttatttttct------taccaagtgaattgatttatcagttat--tcttgccttgttggaattcagGTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATATTCTCGGCCCCTAATTACTGTGGAGAATTTGATAATGCTGGTGCCATGA
||      || ||  ||  |  ||||||  |||||    |      ||| ||||| ||  ||   | | ||||  | |||| |||||| ||||||||||||||||||||| |||||||| || |||| ||| ||||| ||||||||||| || |||||||| |||||||||||||| || || |||||||||||||
gt-tgttgtgttcttaaagatgtgacctacttattaccttataaactacaaagtgtatcaatagtttacttatgcttttgcattgttgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATATTTTCAGCCCCTAACTACTGTGGAGAATTCGACAACGCTGGTGCCATGA

upper sequence: LOC_Os02g57450.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA20G34590.1 (Glycine max), 3'ss of exon 2
gtgccccatgc-tcacaattacctgacctttttatttttcttaccaagtgaattgatttatcagttattcttgccttgttggaattcagGTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATATTCTCGGCCCCTAATTACTGTGGAGAATTTGATAATGCTGGTGCCATGA
||  |  || | |   || ||  |||   |  |   |      | || || || ||| |     ||||  |  || ||||      |||||  | ||||| || || || |||||||||||| | ||||||||||| || |||||||| ||||||||||||||||| ||||| ||||||||||| ||||
gtttcatattccttttaaatatgtgattgtaatggctaggaatcaaaatgtat-gatgtgatgattatatt--ccgtgtta-----cagGTCATGGAAGACGGATATGAATTCTTTGCTAACAGGCAACTTGTAACCATCTTCTCGGCTCCTAATTACTGTGGAGAGTTTGACAATGCTGGTGCTATGA

upper sequence: LOC_Os02g57450.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA19G43800.1 (Glycine max), 3'ss of exon 2
------------gtgcccc-atgctcacaatt----acctgacctttttatttttcttaccaagtgaattgatttatcagttattcttgccttgttggaattcagGTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATATTCTCGGCCCCTAATTACTGTGGAGAATTTGATAATGCTGGTGCCATGA
             ||||   ||| | | |       |    |  | |  ||      | | |    || | ||||||   || || | ||||| ||  |   |||||||| |||||||| || |||||||||||||| || ||||||||||||||||| || || |||||||| ||||| |||||||| ||||||||||| ||||
tttgtaccgtacatgcctttatgtttagatcgggggatagtaggtgtcaatcaactatgctattgaaaataatttat---tttttttggccttctttta--ccagGTTGTGGAAGATGGATATGAGTTCTTTGCTAATCGACAACTTGTAACAATATTTTCAGCACCTAATTATTGTGGGGAATTTGACAATGCTGGTGCTATGA

upper sequence: LOC_Os02g57450.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA10G33040.1 (Glycine max), 3'ss of exon 2
gtgccccatgctcacaattacctgacctttttatttttcttaccaagtgaattgatttatcagttattcttgccttgttggaatt--cagGTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATATTCTCGGCCCCTAATTACTGTGGAGAATTTGATAATGCTGGTGCCATGA
           ||| | |    | |  | | |  || |  |  | || ||||  |  | |    | ||||     | ||||   |  |||||||| ||||| || || || |||||||||||| | ||||||||||| || |||||||| ||||||||||||||||| ||||| ||||||||||| ||||
--------gtttcatagtccttttaaatatgtgattgtaatggctag-gaatcaaaatgtacaatgttctgattatattgggtgttacagGTTGTAGAAGACGGATATGAATTCTTTGCTAACAGACAACTTGTAACTATCTTCTCGGCACCTAATTACTGTGGAGAGTTTGACAATGCTGGTGCTATGA

upper sequence: LOC_Os02g57450.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA03G41200.1 (Glycine max), 3'ss of exon 2
--------gtgcccc-atgctcacaatt----acctgacctttttatttttcttaccaagtgaattgatttatcagttattcttgccttgttggaattcagGTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATATTCTCGGCCCCTAATTACTGTGGAGAATTTGATAATGCTGGTGCCATGA
         ||||   ||| | | |       |    |    |  ||      | | |    || | | || |   || || | | | | ||   |  |||||||| |||||||| ||||||||||||||||| || ||||||||||||||||| || || |||||||| ||||| || ||||| ||||||||||| ||||
tactgtacatgcctttatgtttagatcgggggatagtaggcctcgatcaactatgctattgaaagtaaattgttttttgttttcggcctttttttac-cagGTTGTGGAAGATGGATACGAGTTCTTTGCTAATCGACAACTTGTAACAATATTTTCAGCACCTAATTATTGTGGGGAGTTTGACAATGCTGGTGCTATGA

upper sequence: LOC_Os02g57450.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA10G00960.1 (Glycine max), 3'ss of exon 2
gtgccccatgc-tcacaattacctgacctttttatttttc-ttaccaagtgaattgatttatcagtta---ttcttgccttgttggaatt-cagGTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATATTCTCGGCCCCTAATTACTGTGGAGAATTTGATAATGCTGGTGCCATGA
||  |  |||| |     ||   |||  |||   | |    ||    |  || || |  |||    ||   ||||||  |  ||    ||  ||||||| |||||||| || ||||| ||||| ||  | |||||||| || || || || || ||||| ||||||||||||||||| |||||||| || ||||
gtttcatatgcattttttttttgtgaagtttgagtatgcaattgtagaaagagttcaagtatagcataaacttcttgtgtgttttcttttgtagGTTGTTGAAGATGGATATGAGTTTTTTGCCAATAGACAACTTGTGACTATCTTTTCTGCACCTAACTACTGTGGAGAATTTGACAATGCTGGAGCAATGA

upper sequence: LOC_Os02g57450.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA20G36510.1 (Glycine max), 3'ss of exon 2
--gtgccccatgctcacaattacctgacct------ttttatttttc---ttaccaagtgaattgatttatcagttattcttgccttg---ttggaattcagGTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATATTCTCGGCCCCTAATTACTGTGGAGAATTTGATAATGCTGGTGCCATGA
        ||| |   || |||  |    |      |  ||| | ||      |   |  | |  |||||      |||  ||  |||   || |||  ||||| || ||||||||||| ||||||||||||||||| || |||||||||||||| || || |||||||| |||||||| ||||| |||||||| || ||||
attctttacattcctgcatttatttacattgaaggatagtatctatcaatccgctctgctattaaatttaaattggattaatgttttgacttttgaa--cagGTGGTGGAAGATGGGTATGAGTTCTTTGCTAACCGGCAGCTTGTAACAATATTTTCAGCACCTAATTATTGTGGAGAGTTTGACAATGCTGGCGCTATGA

upper sequence: LOC_Os02g57450.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA10G30970.1 (Glycine max), 3'ss of exon 2
------gtgccccatgctcacaattacc-----tgacctttttatttttcttaccaagtgaattgatttatcagtt--attcttgccttgttggaattcagGTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATATTCTCGGCCCCTAATTACTGTGGAGAATTTGATAATGCTGGTGCCATGA
         |  |   ||  ||| | ||     | | ||| | ||  ||| | |     |        | | | ||  |||  ||    |||   |  ||||| || || |||||||||||||||||||||||||| || |||||||||||||| || || |||||||| |||||||| ||||| |||||||| || ||||
gaggctaaacttctccctttcaaatgccacttattagcttatgatgcttcattctttacgttcctgcatttaaattggattaatgttgagttttgac-cagGTGGTGGAGGATGGGTACGAGTTCTTTGCTAACCGGCAGCTTGTAACAATATTTTCAGCACCTAATTATTGTGGAGAGTTTGACAATGCTGGCGCTATGA

upper sequence: LOC_Os02g57450.2 (Oryza sativa), 3'ss of exon 2
lower sequence: Vv14s0036g00370.t01 (Vitis vinifera), 3'ss of exon 2
----------gtgccccatgctcacaattacctgacctttttatttttcttaccaagtgaattgatttatcagttattcttgccttgttggaatt--cagGTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATATTCTCGGCCCCTAATTACTGTGGAGAATTTGATAATGCTGGTGCCATGA
          |      |||      |  | || |    ||  |  |  |||  |  | ||||    ||   ||| ||||    |      ||||  |||||||| || ||||| || || |||||||| ||||| ||||||||||| ||||| ||||| |||||||| ||||| || ||||||||||||||||||||||
cataagatttgactgtaatggatgtgaggagcttattacttattactcattaggacttcaattttcatagaggtttttctaagataaaattaatttgcagGTTGTAGAGGATGGTTATGAATTCTTTGCAAACCGGCAACTTGTAACCATATTTTCGGCGCCTAATTATTGTGGGGAGTTTGATAATGCTGGTGCCATGA

upper sequence: LOC_Os02g57450.2 (Oryza sativa), 3'ss of exon 2
lower sequence: Vv05s0049g00890.t01 (Vitis vinifera), 3'ss of exon 2
gtgccccatgctcacaattacctgacctttttatttttcttacc---aagtgaattg---atttatcagttatt-cttgccttgttggaattcagGTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATATTCTCGGCCCCTAATTACTGTGGAGAATTTGATAATGCTGGTGCCATGA
||  |   |       |     |  | ||||| ||||  | |||   ||     |     |||| ||  ||| | | |   |  |||   | |||||||| |||||||| |||||||| ||||||||  | ||||||||||| ||||| || || |||||||||||||| || ||||||||||| ||||||||||
gtttcagctctgttttagctttttgcattttttttttggtcacctttaaacctctcaggcatttttctcttactacatatttccttgttgtgcagGTTGTGGAAGATGGATACGAGTTTTTTGCTAATAGACAACTTGTAACCATATTTTCAGCACCTAATTACTGTGGTGAGTTTGATAATGCGGGTGCCATGA

upper sequence: LOC_Os02g57450.2 (Oryza sativa), 3'ss of exon 2
lower sequence: PP1S39_109V6.1 (Physcomitrella patens), 3'ss of exon 3
------gtgccccatgctcacaattacctgacctttttatttttcttaccaagtgaattgatttatcagttattcttgccttgttggaatt---------cagGTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATATTCTCGGCCCCTAATTACTGTGGAGAATTTGATAATGCTGGTGCCATGA
      ||   |  | |   |  ||    || || || |  |    |   | || |  |  ||| |   | || ||   ||    || ||          |||||||| || ||||| |||||||| || ||||| |||||||| || || || ||||| || || ||||| ||||| |||||||||||||| ||||| ||||
tgaccagttgtcttttcatgctgttggtagatctcttcagctgctgt---aggttagattctttgtacataatgctgatctgtgcgggatgtcccatgcacagGTTGTGGAGGATGGTTACGAGTTTTTCGCTAAGCGCCAACTGGTCACTATCTTCTCTGCACCAAATTATTGTGGTGAATTTGATAATGCGGGTGCAATGA

upper sequence: LOC_Os02g57450.2 (Oryza sativa), 3'ss of exon 2
lower sequence: PP1S283_48V6.1 (Physcomitrella patens), 3'ss of exon 3
-----gtgccccatgctcacaattacctgacctttttatttttcttacca--agtgaattgatttatcagttatt--cttgccttg---ttggaattcagGTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATATTCTCGGCCCCTAATTACTGTGGAGAATTTGATAATGCTGGTGCCATGA
      |     |   |     ||   |     |  ||  |   | | |   | |  |  ||| |   | ||| |  ||||| | |   |  | || ||||| || || ||||| || || ||||| || || ||||| || || || || ||||| || || ||||||||||| |||||||||||||| ||||||||||
attgattaatttacttttttcgttgggtagggatcgtagatggttaaaccgtaatttagagatctgataattaatgacttgcgtgggattccgcatgcagGTAGTTGAGGATGGTTATGAATTCTTCGCCAAGCGCCAGCTGGTTACTATTTTCTCTGCACCGAATTACTGTGGTGAATTTGATAATGCGGGTGCCATGA

upper sequence: LOC_Os02g57450.2 (Oryza sativa), 3'ss of exon 2
lower sequence: PP1S22_185V6.1 (Physcomitrella patens), 3'ss of exon 3
-------------gtgccccatgctcacaattacctgacctttttatttttcttaccaagtgaattgatttatcagttattcttgccttgttggaattcagGTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATATTCTCGGCCCCTAATTACTGTGGAGAATTTGATAATGCTGGTGCCATGA
             || |    || |  || |  ||| |    |  | ||  ||||      |  |   |  |  | | |    ||      |   || ||||| || || ||||| || ||||| |||||||| ||||| || || || || ||||| || || ||||||||||| |||||||||||||| ||||| ||||
gattttacaaattgtacaatgtgatt-cagtctcctaatgggtagaattaccttattcctggtgtgtttcaagtactgacatgtgtgaatgtcacatgcagGTAGTGGAGGATGGTTATGAGTTTTTTGCTAAACGCCAGCTGGTCACTATTTTCTCTGCACCAAATTACTGTGGTGAATTTGATAATGCGGGTGCGATGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29638487|gb|CB643496.1|CB643496
EST:     CTGAATTTCTTGAGAAGCATGATTTAGACCTCATCTGTCGAGCCCATCAG                         GTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTAGACCTCATCTGTCGAGCCCATCAGgtgccccatg ... tggaattcagGTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATA
EST: gi|29677282|gb|CB673557.1|CB673557
EST:     CTGAATTTCTTGAGAAGCATGATTTAGACCTCATCTGTCGAGCCCATCAG                         GTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTAGACCTCATCTGTCGAGCCCATCAGgtgccccatg ... tggaattcagGTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATA
EST: gi|29686274|gb|CB682549.1|CB682549
EST:     CTGAATTTCTTGAGAAGCATGATTTAGACCTCATCTGTCGAGCCCATCAG                         GTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTAGACCTCATCTGTCGAGCCCATCAGgtgccccatg ... tggaattcagGTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATA
EST: gi|29638530|gb|CB643539.1|CB643539
EST:     CTGAATTTCTTGAGAAGCATGATTTAGACCTCATCTGTCGAGCCCATCAG                         GTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTAGACCTCATCTGTCGAGCCCATCAGgtgccccatg ... tggaattcagGTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATA
EST: gi|86418445|gb|CI032654.1|CI032654
EST:     CTGAATTTCTTGAGAAGCATGATTTAGACCTCATCTGTCGAGCCCATCAG                         GTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTAGACCTCATCTGTCGAGCCCATCAGgtgccccatg ... tggaattcagGTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATA
EST: gi|88689714|gb|CI733290.1|CI733290
EST:     CTGAATTTCTTGAGAAGCATGATTTAGACCTCATCTGTCGAGCCCATCAG                         GTTGTCGAAGATGGGTACGAGTTCTTTGCTAA
genomic: CTGAATTTCTTGAGAAGCATGATTTAGACCTCATCTGTCGAGCCCATCAGgtgccccatg ... tggaattcagGTTGTCGAAGATGGGTACGAGTTCTTTGCTAA
EST: gi|29686275|gb|CB682550.1|CB682550
EST:     CTGAATTTCTTGAGAAGCATGATTTAGACCTCATCTGTCGAGCCCATCAG                         GTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTAGACCTCATCTGTCGAGCCCATCAGgtgccccatg ... tggaattcagGTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATA
EST: gi|87032028|gb|CI362108.1|CI362108
EST:     TGAGAAGCATGATTTAGACCTCATCTGTCGAGCCCATCAG                         GTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCCCCAACTTGTAACAATG
genomic: TGAGAAGCATGATTTAGACCTCATCTGTCGAGCCCATCAGgtgccccatg ... tggaattcagGTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATA
EST: gi|88214428|gb|CI214277.1|CI214277
EST:     TGATTTAGACCTCATCTGTCGAGCCCATCAG                         GTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATA
genomic: TGATTTAGACCTCATCTGTCGAGCCCATCAGgtgccccatg ... tggaattcagGTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATA
EST: gi|89168491|gb|CI038845.1|CI038845
EST:     CTGAATTTCTTGAGAAGCATGATTTAGACCTCATCTGTCGAGCCCATCAG                         GTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTAGACCTCATCTGTCGAGCCCATCAGgtgccccatg ... tggaattcagGTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATA
EST: gi|58658797|gb|CK047477.1|CK047477
EST:     CTGAATTTCTTGAGAAGCATGATTTAGACCTCATCTGTCGAGCCCATCAG                         GTAGTCGAAGATGGGTACGAGTTCTTTGCTAACCGGCAACTTGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTAGACCTCATCTGTCGAGCCCATCAGgtgccccatg ... tggaattcagGTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATA
EST: gi|86903609|gb|CI300463.1|CI300463
EST:     CTGAATTTCTTGAGAAGCATGATTTAGACCTCATCTGTCGAGCCCATCAG                         GTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAAAT
genomic: CTGAATTTCTTGAGAAGCATGATTTAGACCTCATCTGTCGAGCCCATCAGgtgccccatg ... tggaattcagGTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAA-T
EST: gi|86528458|gb|CI168664.1|CI168664
EST:     ATGATTTAGACCTCATCTGTCGAGCCCATCAG                         GTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATA
genomic: ATGATTTAGACCTCATCTGTCGAGCCCATCAGgtgccccatg ... tggaattcagGTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATA
EST: gi|86436086|gb|CI117808.1|CI117808
EST:     TGTCGAGCCCATCAG                         GTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACGATA
genomic: TGTCGAGCCCATCAGgtgccccatg ... tggaattcagGTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATA
EST: gi|88841216|gb|CI080670.1|CI080670
EST:     TGTCGAGCCCATCAG                         GTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATA
genomic: TGTCGAGCCCATCAGgtgccccatg ... tggaattcagGTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttcttaccaagtgaattgatttatcagttattcttgccttgttggaattcagGTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATATTCTCGGCCCCTAATTACTGTGGAGAATTTGATAATGCTGGTGCCATGA
                                       ccttgtt  CT-rich tract
                     atttatcagttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgccccatgctcacaattacctgacctttttatttttcttaccaagtgaattgatttatcagttattcttgccttgttggaattcagGTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATATTCTCGGCCCCTAATTACTGTGGAGAATTTGATAATGCTGGTGCCATGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG