1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttttgtgtagttactgctcagagactacagtctgttgattctcttcagttcccttttagcctagtttattgattctgaggtatatttgttatgtttgcagCTGCTAATGGTGTAGTTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTGTAAGTCTAACATCACTCTTAATGCTGAATTCCTC
species | Oryza sativa |
transcript | LOC_Os02g42320.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCACGCGCTCACCGCGGTCGGATCCGGCCACACGTCCCTCGGGATCAAAG CTGCTAATGGTGTACTTATCGCCCACTGAGAAGAAATTGCCTTCTATTTCAEST: gi|88759914|gb|CI769470.1|CI769470
genomic: GCACGCGCTCACCGCGGTCGGATCCGGCCAGACGTCCCTCGGGATCAAAGgtgcgtcccg ... atgtttgcagCTGCTAATGGTGTAGTTATCGCC-ACTGAGAAGAAATTGCCTTCTATTTTA
EST: GCACGCGCTCACCGCGGTCGGATCCGGCCAGACGTCCCTCGGGATCAAAG CTGCTAATGGTGTAGTTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGEST: gi|87011186|gb|CI287863.1|CI287863
genomic: GCACGCGCTCACCGCGGTCGGATCCGGCCAGACGTCCCTCGGGATCAAAGgtgcgtcccg ... atgtttgcagCTGCTAATGGTGTAGTTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAG
EST: GCACGCGCTCACCGCGGTCGGATCCGGCCAGACGTCGCTCGGGATCAAAG CTGCTAATGGTGTAGTTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGEST: gi|86847609|gb|CI288727.1|CI288727
genomic: GCACGCGCTCACCGCGGTCGGATCCGGCCAGACGTCCCTCGGGATCAAAGgtgcgtcccg ... atgtttgcagCTGCTAATGGTGTAGTTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAG
EST: GCACGCGCTCACCGCGGTCGGATCCGGCCAGACGTCCCTCGGGATCACAG CTGCTAATGGTGTAGTTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGEST: gi|88391828|gb|CI603347.1|CI603347
genomic: GCACGCGCTCACCGCGGTCGGATCCGGCCAGACGTCCCTCGGGATCAAAGgtgcgtcccg ... atgtttgcagCTGCTAATGGTGTAGTTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAG
EST: CACGCGCTCACCGCCGGTCGGATCCGGCCAGACGTCCCTCGGGATCAAAG CTGCTAATGGTGTAGTTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGEST: gi|88745867|gb|CI769227.1|CI769227
genomic: CACGCGCTCACCGC-GGTCGGATCCGGCCAGACGTCCCTCGGGATCAAAGgtgcgtcccg ... atgtttgcagCTGCTAATGGTGTAGTTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAG
EST: CACGCGCTCACCGNGGTCGGATTCGGCCAGACGNTCC-TCGGGATCAAAG CTGCTAATGGTGTAGTTATCGCCACTGAGAAAGAAATTGCCTTCTATTTTAEST: gi|88294492|gb|CI667466.1|CI667466
genomic: CACGCGCTCACCGCGGTCGGATCCGGCCAGACG-TCCCTCGGGATCAAAGgtgcgtcccg ... atgtttgcagCTGCTAATGGTGTAGTTATCGCCACTGAGAA-GAAATTGCCTTCTATTTTA
EST: GCACGCGCTCACCGCGGTCGGATCCGGCCAGACGTCCCTCGGGATCAAAG CTGCTAATGGTGTAGTTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAG
genomic: GCACGCGCTCACCGCGGTCGGATCCGGCCAGACGTCCCTCGGGATCAAAGgtgcgtcccg ... atgtttgcagCTGCTAATGGTGTAGTTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAG
cagttcccttttagcctagtttattgattctgaggtatatttgttatgtttgcagCTGCTAATGGTGTAGTTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTGTAAGTCTAACATCACTCTTAATGCTGAATTCCTC
tattgat putative branch site (score: 3)
tatatttgttatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgtgtagttactgctcagagactacagtctgttgattctcttcagttcccttttagcctagtttattgattctgaggtatatttgttatgtttgcagCTGCTAATGGTGTAGTTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTGTAAGTCTAACATCACTCTTAATGCTGAATTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG