1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttgttcacgcttcaatttgttgcctcaacttaaagctcctaaccggatatgtttagcttctttcgttatgggctgaagtgatcaattgatggttttgccaacgctgacatgagaatggcaacacgttatggtcctcttttggtgcctgacaaaatttaatctctaccatttgcagCTCTGGAGTGGCTGGAAAAGGATCCAAATGTAACGATCAGGAGGAAGGATTGTATTGATGGTTATCTTGGTGCATTTGAGAAAGATGGCTCAAATGTTTT
species | Oryza sativa |
transcript | LOC_Os02g39400.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTCCCGCCACACTGTATAATTGGTTCTGGCGAGGAAAATTTTGTCCCAG CTCTGGAGTGGCTGGAAAAGGATCCAAATGTAACGATCAGGAGGAAGGATTEST: gi|29626749|gb|CB631760.1|CB631760
genomic: TTTCCCGCCACACTGTATAATTGGTTCTGGCGAGGAAAATTTTGTCCCAGgttgttcacg ... ccatttgcagCTCTGGAGTGGCTGGAAAAGGATCCAAATGTAACGATCAGGAGGAAGGATT
EST: TTTCCCGCCACACTGTATAATTGGTTCTGGCGAGGAAAATTTTGTCCCAG CTCTGGAGTGGCTGGAAAAGGATCCAAATGTAACGATCAGGAGGAAGGATTEST: gi|29669629|gb|CB665904.1|CB665904
genomic: TTTCCCGCCACACTGTATAATTGGTTCTGGCGAGGAAAATTTTGTCCCAGgttgttcacg ... ccatttgcagCTCTGGAGTGGCTGGAAAAGGATCCAAATGTAACGATCAGGAGGAAGGATT
EST: TTTCCCGCCACACTGTATAATTGGTTCTGGCGAGGAAAATTTTGTCCCAG CTCTGGAGTGGCTGGAAAAGGATCCAAATGTAACGATCAGGAGGAAGGATTEST: gi|5803390|gb|AI978338.1|AI978338
genomic: TTTCCCGCCACACTGTATAATTGGTTCTGGCGAGGAAAATTTTGTCCCAGgttgttcacg ... ccatttgcagCTCTGGAGTGGCTGGAAAAGGATCCAAATGTAACGATCAGGAGGAAGGATT
EST: TTTCCCGCCACACTGTATAATTGGTTCTGGCGAGGAAAATTTTGTCCCAG CTCTGGAGTGGCTGGAAAAGGATCCAAATGTAACGATCAGGAGGAAGGATTEST: gi|29669630|gb|CB665905.1|CB665905
genomic: TTTCCCGCCACACTGTATAATTGGTTCTGGCGAGGAAAATTTTGTCCCAGgttgttcacg ... ccatttgcagCTCTGGAGTGGCTGGAAAAGGATCCAAATGTAACGATCAGGAGGAAGGATT
EST: TTTCCCGCCACACTGTATAATTGGTTCTGGCGAGGAAAATTTTGTCCCAG CTCTGGAGTGGCTGGAAAAGGATCCAAATGTAACGATCAGGAGGAAGGATTEST: gi|29665841|gb|CB662116.1|CB662116
genomic: TTTCCCGCCACACTGTATAATTGGTTCTGGCGAGGAAAATTTTGTCCCAGgttgttcacg ... ccatttgcagCTCTGGAGTGGCTGGAAAAGGATCCAAATGTAACGATCAGGAGGAAGGATT
EST: TTTCCCGCCACACTGTATAATTGGTTCTGGCGAGGAAAATTTTGTCCCAG CTCTGGAGTGGCTGGAAAAGGATCCAAATGTAACGATCAGGAGGAAGGATTEST: gi|29665842|gb|CB662117.1|CB662117
genomic: TTTCCCGCCACACTGTATAATTGGTTCTGGCGAGGAAAATTTTGTCCCAGgttgttcacg ... ccatttgcagCTCTGGAGTGGCTGGAAAAGGATCCAAATGTAACGATCAGGAGGAAGGATT
EST: TTTCCCGCCACACTGTATAATTGGTTCTGGCGAGGAAAATTTTGTCCCAG CTCTGGAGTGGCTGGAAAAGGATCCAAATGTAACGATCAGGAGGAAGGATT
genomic: TTTCCCGCCACACTGTATAATTGGTTCTGGCGAGGAAAATTTTGTCCCAGgttgttcacg ... ccatttgcagCTCTGGAGTGGCTGGAAAAGGATCCAAATGTAACGATCAGGAGGAAGGATT
acacgttatggtcctcttttggtgcctgacaaaatttaatctctaccatttgcagCTCTGGAGTGGCTGGAAAAGGATCCAAATGTAACGATCAGGAGGAAGGATTGTATTGATGGTTATCTTGGTGCATTTGAGAAAGATGGCTCAAATGTTTT
tctctacc CT-rich tract
aaaatttaatctcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgttcacgcttcaatttgttgcctcaacttaaagctcctaaccggatatgtttagcttctttcgttatgggctgaagtgatcaattgatggttttgccaacgctgacatgagaatggcaacacgttatggtcctcttttggtgcctgacaaaatttaatctctaccatttgcagCTCTGGAGTGGCTGGAAAAGGATCCAAATGTAACGATCAGGAGGAAGGATTGTATTGATGGTTATCTTGGTGCATTTGAGAAAGATGGCTCAAATGTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG