1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ataataagaccatatgtcttcatcctatttcgactgatgaactagaaggatattgtttctcatttcttcatttgtttgtgtgcattgtggtgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGATTGATGTGCCAAACCTTCAGGTCATCAAGCTCATGCAGAGCTTCAAGTC
species | Oryza sativa |
transcript | LOC_Os02g34460.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGAEST: gi|88725311|gb|CI748570.1|CI748570
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGAEST: gi|58586656|gb|CF984964.1|CF984964
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGAEST: gi|88398335|gb|CI588223.1|CI588223
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGAEST: gi|88363743|gb|CI609100.1|CI609100
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG AGGGGGTTTTGTACGCCAAGAAGGACTAAAATTTGGCAAAACACCCACAGAEST: gi|25800452|gb|CA756413.1|CA756413
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGAEST: gi|88444819|gb|CI696249.1|CI696249
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGAEST: gi|88314115|gb|CI602447.1|CI602447
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGAEST: gi|163929239|gb|EG712692.1|EG712692
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGAEST: gi|88387154|gb|CI577940.1|CI577940
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGAEST: gi|88329122|gb|CI658784.1|CI658784
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGAEST: gi|11863303|gb|AU065659.2|AU065659
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGAEST: gi|88580666|gb|CI697610.1|CI697610
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGAEST: gi|86899170|gb|CI298075.1|CI298075
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGAEST: gi|117232299|gb|CT860043.1|CT860043
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGAEST: gi|88414633|gb|CI698742.1|CI698742
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGAEST: gi|4879414|gb|AU063713.1|AU063713
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGAEST: gi|163926015|gb|EG712319.1|EG712319
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGAEST: gi|88732344|gb|CI755521.1|CI755521
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: ATCATCCCCAAGAAGAACCGGAATGAGATCTGNAAGTACCTCTTCCAAG AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGAEST: gi|55413805|gb|CV726181.1|CV726181
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG AGGGGGTTTTGTACGCCAAGAAGGTACTTCTATTTGGCAAAACACCCACAGEST: gi|58690564|gb|CK079251.1|CK079251
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGG-ACTACAATTTGGCAAAACACCCACAG
EST: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGAEST: gi|88343960|gb|CI638695.1|CI638695
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGAEST: gi|58665575|gb|CK054261.1|CK054261
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGAEST: gi|3090519|gb|C93506.1|C93506
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG AGGGGGTTTTGTACGCNAAGAAGGACTACAATTTGGCAAAACACCCACAGAEST: gi|88426462|gb|CI576704.1|CI576704
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGAEST: gi|88588548|gb|CI706370.1|CI706370
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGAEST: gi|88426391|gb|CI576633.1|CI576633
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGAEST: gi|88356652|gb|CI617735.1|CI617735
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGAEST: gi|88330762|gb|CI636770.1|CI636770
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
aaggatattgtttctcatttcttcatttgtttgtgtgcattgtggtgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGATTGATGTGCCAAACCTTCAGGTCATCAAGCTCATGCAGAGCTTCAAGTC
tattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataataagaccatatgtcttcatcctatttcgactgatgaactagaaggatattgtttctcatttcttcatttgtttgtgtgcattgtggtgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGATTGATGTGCCAAACCTTCAGGTCATCAAGCTCATGCAGAGCTTCAAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - catatgt
- - - - - - - - - ttcatcc
- - - - - - - - - - - - - - - - -ctgatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcatt