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...caattgttttttttttaaatagcaaaacaaatatacaaccttctccgcgttgaggaaatcgaatctgtattttctgacaactaattgttggcctttacagGACAAGAGGATTACAATAGGCTGAGGCCTCTCAGCTACAGAGGAGCTGATGTCTTTTTACTAGCATTTTCCCTCATCAGCAAAGCGAGCTATGAGAATAT
species | Oryza sativa |
transcript | LOC_Os02g20850.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGTGGTCGTCGACGGCAACACGGTGAACCTTGGGCTCTGGGATACTGCTG GACAAGAGGATTACAATAGGCTGAGGCCTCTCAGCTACAGAGGAGCTGATGEST: gi|33675900|gb|CF304139.1|CF304139
genomic: CGTGGTCGTCGACGGCAACACGGTGAACCTTGGGCTCTGGGATACTGCTGgtatgtgttg ... gcctttacagGACAAGAGGATTACAATAGGCTGAGGCCTCTCAGCTACAGAGGAGCTGATG
EST: CGTGGTCGTCGACGGCAACACGGTGAACCTTGGGCTCTGGGATACTGCTG GACAAGAGGATTACAATAGGCTGAGGCCTCTCAGCTACAGAGGAGCTGATGEST: gi|2443032|gb|C74803.1|C74803
genomic: CGTGGTCGTCGACGGCAACACGGTGAACCTTGGGCTCTGGGATACTGCTGgtatgtgttg ... gcctttacagGACAAGAGGATTACAATAGGCTGAGGCCTCTCAGCTACAGAGGAGCTGATG
EST: CGTGGTCGTCGACGGCAACACGGTGAACCTTGGGCTCTGGGATACTGCTG GACAAGAGGATTACAATAGGCTGAGGCCTCTCAGCTACAGAGGAGCTGATGEST: gi|33681463|gb|CF309702.1|CF309702
genomic: CGTGGTCGTCGACGGCAACACGGTGAACCTTGGGCTCTGGGATACTGCTGgtatgtgttg ... gcctttacagGACAAGAGGATTACAATAGGCTGAGGCCTCTCAGCTACAGAGGAGCTGATG
EST: CGTGGTCGTCGACGGCAACACGGTGAACCTTGGGCTCTGGGATACTGCTG GACAAGAGGATTACAATAGGCTGAGGCCTCTCAGCTACAGAGGAGCTGATG
genomic: CGTGGTCGTCGACGGCAACACGGTGAACCTTGGGCTCTGGGATACTGCTGgtatgtgttg ... gcctttacagGACAAGAGGATTACAATAGGCTGAGGCCTCTCAGCTACAGAGGAGCTGATG
cgcgttgaggaaatcgaatctgtattttctgacaactaattgttggcctttacagGACAAGAGGATTACAATAGGCTGAGGCCTCTCAGCTACAGAGGAGCTGATGTCTTTTTACTAGCATTTTCCCTCATCAGCAAAGCGAGCTATGAGAATAT
aactaat putative branch site (score: 11)
cctttac putative PPT
tgtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caattgttttttttttaaatagcaaaacaaatatacaaccttctccgcgttgaggaaatcgaatctgtattttctgacaactaattgttggcctttacagGACAAGAGGATTACAATAGGCTGAGGCCTCTCAGCTACAGAGGAGCTGATGTCTTTTTACTAGCATTTTCCCTCATCAGCAAAGCGAGCTATGAGAATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - atacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caactaa