1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gattagcagcggaaacacatgctagcatggacagaggtgctccaaaccgtttcctcaccattgaaacacatatttttggatgcttttacttactgaagagGAGGGGAAGGAGGGGCAGCGCCCATTCTCCTGCCGGCGCTGCCGGAGCCGAGAACCGCGAGATCTGGAGCACCCACACTCGATACGGCTGGATCCGTGGT
species | Oryza sativa |
transcript | LOC_Os02g20340.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
accgtttcctcaccattgaaacacatatttttggatgcttttacttactgaagagGAGGGGAAGGAGGGGCAGCGCCCATTCTCCTGCCGGCGCTGCCGGAGCCGAGAACCGCGAGATCTGGAGCACCCACACTCGATACGGCTGGATCCGTGGT
tacttac putative branch site (score: 1)
cttttactt CT-rich tract
aaacacatattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattagcagcggaaacacatgctagcatggacagaggtgctccaaaccgtttcctcaccattgaaacacatatttttggatgcttttacttactgaagagGAGGGGAAGGAGGGGCAGCGCCCATTCTCCTGCCGGCGCTGCCGGAGCCGAGAACCGCGAGATCTGGAGCACCCACACTCGATACGGCTGGATCCGTGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- -tagcagc
- - - - - - - - -catgcta
- - - - - - - - - - - - gcatgga
- - - - - - - - - - - - - - - - - - gtgctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggatgc