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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctgtatctttaatattggcatcgcttcggtgccctagaaaatttcggtctactaagtttttacggtggaaattatgccaatctgcatttctttgatcagGTTATATTTGGGCGGCGACATGTTGGAATAATGTCAGCTGAATCAGTAGGAAATTACGGAGTACGGTGAGGGTCATGTTTCTTGCATTATCAAATTCGTG

Basic information

species Oryza sativa
transcript LOC_Os02g10430.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g10430.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G006277_T01 (Zea mays), 3'ss of exon 2
tctgtatctttaatattggcatcgcttcggtgccctagaaaat-ttcggtctactaagtttttacgg---tggaaattatgccaatctgcatttctttgatcagGTTATATTTGGGCGGCGACATGTTGGAATAATGTCAGCTGAATCAGTAGGAAATTACGGAGTACGGTGAGGGTCATGTTTCTTGCATTATCAAATTCGTG
      |    |  |||   ||  | | || |    | |   | ||| | ||    |||||  |      |   | || | |    |    | | | |||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| |||||||| ||                                   
----agtgcagatcattcatatgacattggaggttaatatcttgttctggctctgcagtttccataaaattctgagttttacagtgcaaactatgtctgatcagGTTATATTTGGACGACGACATGTTGGGATAATGTCAGCTGAATCAGTAGGAAACTACGGAGTCCG-----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29659935|gb|CB656210.1|CB656210
EST:     TGTACAGCCCAGCAGCTGATAGCAAAATCAGATCAGTAGCTGGTGAGAAG                         GTTATATTTGGGCGGCGACATGTTGGAATAATGTCAGCTGAATCAGTAGGA
genomic: TGTACAGCCCAGCAGCTGATAGCAAAATCAGATCAGTAGCTGGTGAGAAGgtaatgcacc ... ctttgatcagGTTATATTTGGGCGGCGACATGTTGGAATAATGTCAGCTGAATCAGTAGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggtctactaagtttttacggtggaaattatgccaatctgcatttctttgatcagGTTATATTTGGGCGGCGACATGTTGGAATAATGTCAGCTGAATCAGTAGGAAATTACGGAGTACGGTGAGGGTCATGTTTCTTGCATTATCAAATTCGTG
                                        catttcttt  CT-rich tract
        taagttttta  TA-rich tract