1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttgtgacttatcagttgcgagtttgggattacttgaactttactggcgcttctttactgataactacaagtcttgatttctactccaatctatgttgaagGCACCCTAACATTAGCAGCCAAAACGGAGCAATCTGCTTGGACATACTGAAGGACCAATGGAGCCCAGCCCTTACATTGAAGACGGCACTGCTTTCCCTC
species | Oryza sativa |
transcript | LOC_Os01g70140.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCACCAAAGTATG GCACCCTAACATTAGCAGCCAAAACGGAGCAATCTGCTTGGACATACTGAAEST: gi|86529021|gb|CI169227.1|CI169227
genomic: TCACCAAAGTATGgtatgcaagc ... tatgttgaagGCACCCTAACATTAGCAGCCAAAACGGAGCAATCTGCTTGGACATACTGAA
EST: CCCCTTTGAGCCTCCTAAGATGCAGTTTATCACCAAAGTATG GCACCCTAACATTAGCAGCCAAAACGGAGCAATCTGCTTGGACATACTGAAEST: gi|87035145|gb|CI189767.1|CI189767
genomic: CCCCTTTGAGCCTCCTAAGATGCAGTTTATCACCAAAGTATGgtatgcaagc ... tatgttgaagGCACCCTAACATTAGCAGCCAAAACGGAGCAATCTGCTTGGACATACTGAA
EST: GTGGTTACCCCTTTGAGCCTCCTAAGATGCAGTTTATCACCAAAGTATG GCACCCTAACATTAGCAGCCAAAACGGAGCAATCTGCTTGGACATACTGAAEST: gi|86599379|gb|CI251337.1|CI251337
genomic: GTGGTTACCCCTTTGAGCCTCCTAAGATGCAGTTTATCACCAAAGTATGgtatgcaagc ... tatgttgaagGCACCCTAACATTAGCAGCCAAAACGGAGCAATCTGCTTGGACATACTGAA
EST: GTGGTTACCCCTTTGAGCCTCCTAAGATGCAGTTTATCACCAAAGTATG GCACCCTAACATTAGCAGCCAAAACGGAGCAATCTGCTTGGACATACTGAAEST: gi|86418458|gb|CI032667.1|CI032667
genomic: GTGGTTACCCCTTTGAGCCTCCTAAGATGCAGTTTATCACCAAAGTATGgtatgcaagc ... tatgttgaagGCACCCTAACATTAGCAGCCAAAACGGAGCAATCTGCTTGGACATACTGAA
EST: TCCTAAGATGCAGTTTATCACCAAAGTATG GCACCCTAACATTAGCAGCCAAAACGGAGCAATCTGCTTGGACATACTGAAEST: gi|186893144|gb|FG124829.1|FG124829
genomic: TCCTAAGATGCAGTTTATCACCAAAGTATGgtatgcaagc ... tatgttgaagGCACCCTAACATTAGCAGCCAAAACGGAGCAATCTGCTTGGACATACTGAA
EST: GTTTATCACCAAAGTATG GCACCCTAACATTAGCAGCCAAAACGGAGCAATCTGCTTGGACATACTGAAEST: gi|3762498|gb|AU029250.1|AU029250
genomic: GTTTATCACCAAAGTATGgtatgcaagc ... tatgttgaagGCACCCTAACATTAGCAGCCAAAACGGAGCAATCTGCTTGGACATACTGAA
EST: GTGGTTACCCCTTTGAGCCTCCTAAGATGCAGTTTATCACCAAAGTATG GCACCCTAACATTAGCAGCCAAAACGGAGCAATCTGCTTGGACATACTGAAEST: gi|88238860|gb|CI236711.1|CI236711
genomic: GTGGTTACCCCTTTGAGCCTCCTAAGATGCAGTTTATCACCAAAGTATGgtatgcaagc ... tatgttgaagGCACCCTAACATTAGCAGCCAAAACGGAGCAATCTGCTTGGACATACTGAA
EST: CCTTTGAGCCTCCTAAGATGCAGTTTATCACCAAAGTATG GCACCCTAACATTAGCAGCCAAAACGGAGCAATCTGCTTGGACATACTGAAEST: gi|3762499|gb|AU029251.1|AU029251
genomic: CCTTTGAGCCTCCTAAGATGCAGTTTATCACCAAAGTATGgtatgcaagc ... tatgttgaagGCACCCTAACATTAGCAGCCAAAACGGAGCAATCTGCTTGGACATACTGAA
EST: GTGGTTACCCCTTTGAGCCTCCTAAGATNCAGTTTATCCCCAAAGTNTG GCACCCTAACATTAGCAGCCAAAACGGAGCAATCTGCTTGGACATACTGAAEST: gi|3767494|gb|AU031604.1|AU031604
genomic: GTGGTTACCCCTTTGAGCCTCCTAAGATGCAGTTTATCACCAAAGTATGgtatgcaagc ... tatgttgaagGCACCCTAACATTAGCAGCCAAAACGGAGCAATCTGCTTGGACATACTGAA
EST: GTGGTTACCCCTTTGGAG-CTCCTAAGATGCAGTTTATCACCAAAGTATG GCACCCTAACATTAGCAGCCAAAACGGAGCAATCTGCTTGGACATACTGAA
genomic: GTGGTTACCCCTTT-GAGCCTCCTAAGATGCAGTTTATCACCAAAGTATGgtatgcaagc ... tatgttgaagGCACCCTAACATTAGCAGCCAAAACGGAGCAATCTGCTTGGACATACTGAA
gcgcttctttactgataactacaagtcttgatttctactccaatctatgttgaagGCACCCTAACATTAGCAGCCAAAACGGAGCAATCTGCTTGGACATACTGAAGGACCAATGGAGCCCAGCCCTTACATTGAAGACGGCACTGCTTTCCCTC
ataacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtgacttatcagttgcgagtttgggattacttgaactttactggcgcttctttactgataactacaagtcttgatttctactccaatctatgttgaagGCACCCTAACATTAGCAGCCAAAACGGAGCAATCTGCTTGGACATACTGAAGGACCAATGGAGCCCAGCCCTTACATTGAAGACGGCACTGCTTTCCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - -cagttgc
- - - - - - - - - - - - - - - - - - - - tactggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactaca