Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88542894|gb|CI472252.1|CI472252EST: GGGTCACCGTCGAGATCACCGTCTCCTACCTCGACGCAGCCCGTGCAAAC GAGGAGATCGAGATGGAGGCGAGGGTTCTGGGCATCGGCGAGACGACCGGG
genomic: GGGTCACCGTCGAGATCACCGTCTCCTACCTCGACGCAGCCCGTGCAAACgtaagtacag ... gtggtcgcagGAGGAGATCGAGATGGAGGCGAGGGTTCTGGGCATCGGCGAGACGACCGGG
EST:
gi|117232032|gb|CT842043.1|CT842043EST: GGGTCACCGTCGAGATCACCGTCTCCTACCTCGACGCAGCCCGTGCAAAC GAGGAGATCGAGATGGAGGCGAGGGTTCTGGGCATCGGCGAGACGACCGGG
genomic: GGGTCACCGTCGAGATCACCGTCTCCTACCTCGACGCAGCCCGTGCAAACgtaagtacag ... gtggtcgcagGAGGAGATCGAGATGGAGGCGAGGGTTCTGGGCATCGGCGAGACGACCGGG
EST:
gi|88549110|gb|CI478968.1|CI478968EST: GGGTCACCGTCGAGATCACCGTCTCCTACCTCGACGCAGCCCGTGCAAAC GAGGAGATCGAGATGGAGGCGAGGGTTCTGGGCATCGGCGAGACGACCGGG
genomic: GGGTCACCGTCGAGATCACCGTCTCCTACCTCGACGCAGCCCGTGCAAACgtaagtacag ... gtggtcgcagGAGGAGATCGAGATGGAGGCGAGGGTTCTGGGCATCGGCGAGACGACCGGG
EST:
gi|88547700|gb|CI478016.1|CI478016EST: GGGTCACCGTCGAGATCACCGTCTCCTACCTCNACGCAGCCCGTGCAAAC GAGGAGATCGAGATGGAGGCGAGGGTTCTGGGCATCGGCGAGACGACCGGG
genomic: GGGTCACCGTCGAGATCACCGTCTCCTACCTCGACGCAGCCCGTGCAAACgtaagtacag ... gtggtcgcagGAGGAGATCGAGATGGAGGCGAGGGTTCTGGGCATCGGCGAGACGACCGGG
EST:
gi|88560844|gb|CI491541.1|CI491541EST: GGGTCACCGTCGAGATCACCGTCTCCTACCTCGACGCAGCCCGTGCAAAC GAGGGAGGATTCGAGATGGGGAGGCGAGGGTTCTGGGCATTCGGCGAGACG
genomic: GGGTCACCGTCGAGATCACCGTCTCCTACCTCGACGCAGCCCGTGCAAACgtaagtacag ... gtggtcgcagGA-GGA-GA-TCGAGAT--GGAGGCGAGGGTTCTGGGCA-TCGGCGAGACG
EST:
gi|88550986|gb|CI480477.1|CI480477EST: GGGTCACCGTCGAGATCACCGTCTCCTACCTCGACGCAGCCCGTGCAAAC GAGGAGATCGAGATGGAGGCGAGGGTTCTGGGCATCGGCGAGACGACCGGG
genomic: GGGTCACCGTCGAGATCACCGTCTCCTACCTCGACGCAGCCCGTGCAAACgtaagtacag ... gtggtcgcagGAGGAGATCGAGATGGAGGCGAGGGTTCTGGGCATCGGCGAGACGACCGGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgagcttcggctgcttcgcgatggatattgatcgatcatgcatgcgtggtcgcagGAGGAGATCGAGATGGAGGCGAGGGTTCTGGGCATCGGCGAGACGACCGGGTGCGTCACCGTGGAGGTGAGGAGGAAGGGCGCCGGCGAGGTGCTGGCGC
tattgat putative branch site (score: 3)
atattgat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtacagtacccgtgatcgagcttcggctgcttcgcgatggatattgatcgatcatgcatgcgtggtcgcagGAGGAGATCGAGATGGAGGCGAGGGTTCTGGGCATCGGCGAGACGACCGGGTGCGTCACCGTGGAGGTGAGGAGGAAGGGCGCCGGCGAGGTGCTGGCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA