Sequence
atgc intronic sequence ATGC exonic sequence...tgttgaatgtttctgttttatccactgggtatctcccatctctgttacttttctctgccaatacttttacactaatctcctttactattaactgttgcagGCTTAAAATATTTGCTCCAATCACAGTTCTAGCATTTATTATTCTTGTGCCTGTTAATTGGACCAATATTACCCTTCAAAGCTCGAAGGTGCAGCACAGT
Basic information
species | Oryza sativa |
transcript | LOC_Os01g35050.4 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g35050.3 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G163334_T01 (Zea mays), 3'ss of exon 1
--tgttgaatgtttctgttttatccactgggtatctcccatctctgtt-acttttctctgccaatacttttacactaatctcctttactattaactgttgcagGCTTAAAATATTTGCTCCAATCACAGTTCTAGCATTTATTATTCTTGTGCCTGTTAATTGGACCAATATTACCCTTCAAAGCTCGAAGGTGCAGCACAGT
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gaatcaaaatatttgtactttattccctttggttcactgattgacacccatcttattttttctttacatgta--cttatttactttgtt-tcacttgttacagACTTAAAATATTTGCTCCAATCTCAGTTCTAGCTTTCATTGTTCTTGTCCCTGTTAATTGGACCAATGATACTCTGCAATTCTCAAAGTTAGAGCACAGC
upper sequence: LOC_Os01g35050.3 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G021194_T01 (Zea mays), 3'ss of exon 2
--tgttgaatgtttctgttttatccactgggtatctcccatctctgtt-acttttctctgccaatacttttacactaatctcctttactattaactgttgcagGCTTAAAATATTTGCTCCAATCACAGTTCTAGCATTTATTATTCTTGTGCCTGTTAATTGGACCAATATTACCCTTCAAAGCTCGAAGGTGCAGCACAGT
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gaatcaaaacatttgtactttattccctttggttcactgattgacacccatcttattttttctttacatgta--cttatttactttgtt-tcacttgttacagACTTAAAATATTTGCTCCAATCTCAGTTCTAGCTTTCATTGTTCTTGTCCCTGTTAATTGGACCAATGATACTCTGCAATTCTCGAAGTTAGAGCACAGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58609230|gb|CK037263.1|CK037263EST: AGCCATGCAGGCCTTGATTCAGCTGTCTATCTGCGGATCTACTTAATAGG GCTTAAAATATTTGCTCCAATCACAGTTCTAGCATTTATTATTCTTGTGCC
genomic: AGCCATGCAGGCCTTGATTCAGCTGTCTATCTGCGGATCTACTTAATAGGgtatgcaatt ... actgttgcagGCTTAAAATATTTGCTCCAATCACAGTTCTAGCATTTATTATTCTTGTGCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tacttttctctgccaatacttttacactaatctcctttactattaactgttgcagGCTTAAAATATTTGCTCCAATCACAGTTCTAGCATTTATTATTCTTGTGCCTGTTAATTGGACCAATATTACCCTTCAAAGCTCGAAGGTGCAGCACAGT
tattaac putative branch site (score: 1)
tttactattaa TA-rich tract